Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_3360
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Entry
SCAT_3360 CDS
T01646
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sct03019
]
SCAT_3360 (hrpA)
Enzymes [BR:
sct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SCAT_3360 (hrpA)
Messenger RNA biogenesis [BR:
sct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SCAT_3360 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
AAA_16
PhoH
NACHT
SLFN-g3_helicase
DUF6139
SRP54
AAA_30
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CCB76062
LinkDB
All DBs
Position
complement(3554404..3558366)
Genome browser
AA seq
1320 aa
AA seq
DB search
MSTAPAPALAALLARLSELTLLDQQRLGRRLDGVRKVRKPEARAAVLAEIDERITEAERR
IALRRAAVPEIRYPESLPVSQKKDDILAAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VKGLIGHTQPRRIAARTVAERIAEELGTQLGDVVGWKVRFTDQVSESTLVKLMTDGIMLA
EIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFARH
FGRFAVVGPDGGGGATPPSAPIVEVSGRTYPVEVRYRPLLEEGSEDPDRDQITAICDAVD
ELRAEGPGDILVFLSGEREIRDTADALEKKKLPFTEVLPLYARLTHAEQHRVFQPHTGRR
IVLATNVAETSLTVPGIRYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRT
SDGICVRLYSEDDFLARPEFTDAEILRTNLASVILQMTAAGLGDISRFPFIDPPDSRNIK
DGVQLLEELGALDPKEKDARKRLTPLGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAA
ALSIQDPRERPSDKQQQADQQHARFKDENSDFLAYLNLWRYLREQQKALSSSAFRRMCRS
EYLNYLRIREWQDIYSQLRTVVKSMGVHINDADADPQHIHTALLAGLLSHVGLKDTEKNE
YLGARSAKFAVFPGSALFKKPPRWIMSAELVETSRLWARVNARIEPEWIEPLAQHLLKRT
YSEPHWEQKQAAVMAYERVTLYGVPVVAQRKVNYGRIDPEVSRDLFIRNALVEGDWRTHH
QFFHDNRKLLQEVEELEHRARRRDILVDDEALFDFYDERIPEHVVSGAHFDSWWKHKRRE
APELLNFEQSMLINESAEAVTKADYPDSWRQGALKFKVTYQFEPGADADGVTVHIPLQVL
NQVTPDGFDWQIPGLREDLVTELIRSLPKPIRRNYVPAPNFARAFLDRVAAGPEPLTTAL
ARELHRMGGTSVAPEDFDRSKVPDHLKPTFRVVDERKRKIAEDKDLEALKLRLKPRTREA
ITKAAGSVGIEQRGGLTAWTVGTLPRTFEVRRGGQPVKAYPALVDEGASVAVRLFDTAIE
QSEAMWRGTRRLILLGLPSNPAKFAQDRMGNAEKLALSRSPHGSVQALFEDCLTAAADRL
IAAHGGPAWDEEGFRKLFDSVRADITDATLETVSAVQRVLAAWHSCERRLKATTSLVLVP
NLTDVKEQLAALIHPGFVTAAGVRRLPDLLRYLVAADRRLQQMPSGAQRDRARMEKVHEM
RDEYAQLLAAFPEGRPVPAEVREIRWMIEELRVSYFAHALGTAYPVSDKRILKAIDAAWP
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtccactgcgcctgcccccgccctggccgccctgctggcgcgcctgtccgaactgacc
ctgctcgaccagcagcgtctcggccgccgcctcgacggcgtccgcaaggtccgcaagccg
gaagcccgcgcggcggtgctcgcggagatcgacgagcggatcaccgaggccgagcgccgg
atcgcgctgcgccgggccgccgtgcccgagatccgctaccccgagtcgctgccggtcagc
cagaagaaggacgacatcctcgccgccatccgcgaccaccaggtggtcatcgtggcgggc
gagaccggctccggcaagaccacccagatccccaagatctgcctggagctggggcgtggc
gtcaaggggctgatcggccacacccagccgcgccggatcgccgcccgcaccgtggccgag
cggatcgccgaggagctgggcacccagctcggcgacgtggtgggctggaaggtccgcttc
accgaccaggtgagcgagtccaccctggtcaagctgatgaccgacggcatcatgctcgcc
gagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccac
gagcgcagcctcaacatcgacttcctcctcggctacctggcccagctcctcccccgccgc
ccggacctcaaggtcgtcatcacctcggccaccatcgaccccgagcgcttcgcccggcac
ttcggccgcttcgccgtcgtcggcccggacggcggcggtggcgccaccccgcccagcgcc
ccgatcgtcgaggtcagcgggcgtacctacccggtcgaggtgcgctaccgcccgctgctg
gaggagggctccgaggaccccgaccgcgaccagatcaccgcgatctgcgacgccgtcgac
gaactccgggccgagggccccggcgacatcctggtcttcctctccggggaacgggagatc
cgggacaccgccgacgcgctggagaagaagaagctgccgttcaccgaggtgctgccgctg
tacgcgcggctgacccacgccgagcagcaccgggtcttccagccccacaccggccgccgc
atcgtgctcgccaccaacgtcgccgagacctcgctgaccgtccccggcatccggtacgtc
atcgaccccggcttcgcccgcatctcccgctacagccaccgcaccaaggtgcagcggctg
ccgatcgaaccggtcagccaggccagcgccaaccagcgcaagggccgctgcggccggacc
agcgacggcatctgcgtccggctgtactccgaggacgacttcctggcccgcccggagttc
accgacgccgagatcctgcgcaccaacctggcctcggtgatcctccagatgaccgcggcc
ggcctcggcgacatctcccgcttcccgttcatcgacccgccggacagccgcaacatcaag
gacggcgtccagctcctggaggaactcggcgcgctcgacccgaaggagaaggacgcccgc
aagcggctcaccccgctcggccgcaagctcgcccagctcccggtcgacccgcggctggcc
cgcatggtgctggaggccgaccgcaacggctgcgtacgcgaggtgatggtgatcgccgcg
gcgctctccatccaggacccgcgcgaacgcccctccgacaagcagcagcaggccgaccag
cagcacgcccgcttcaaggacgagaacagcgacttcctcgcctacctcaacctgtggcgt
tacctgcgcgagcagcagaaggcgctctcctcctccgcgttccgccggatgtgccgcagc
gagtacctcaactacctgcggatacgcgaatggcaggacatctacagccagttgcgcacg
gtcgtgaagtccatgggcgtccacatcaacgacgccgacgccgacccgcagcacatccac
accgcgctgctggccgggctgttgtcgcacgtggggctcaaggacacggagaagaacgag
tacctgggcgcccgcagcgcgaagttcgccgtcttccccggctccgcgctcttcaagaag
ccgccgcgctggatcatgtcggccgagctggtggagacctcccggctgtgggcccgggtc
aacgcgcgcatcgagccggagtggatcgagccgctcgcccagcacctgctcaagcgcacc
tacagcgaaccgcactgggagcagaagcaggccgccgtgatggcctacgaacgggtcacc
ctctacggcgtcccggtcgtcgcccagcgcaaggtgaactacggccgcatcgaccccgag
gtctcccgcgacctgttcatccgcaacgccctggtcgagggcgactggcgcacccaccac
cagttcttccacgacaaccgcaagctcctccaggaggtcgaggagctggagcaccgggcg
cgccgccgcgacatcctggtggacgacgaggcgctcttcgacttctacgacgagcgcatc
cccgaacacgtcgtctccggcgcccacttcgactcgtggtggaagcacaagcgccgggag
gcccccgagctgctcaacttcgagcagtcgatgctgatcaacgaatcggcggaggcggtc
accaaggccgactaccccgactcctggcggcagggcgcgctgaagttcaaggtgacctac
cagttcgagccgggcgcggacgcggacggggtcaccgtgcacatcccgctccaggtgctc
aaccaggtcaccccggacggcttcgactggcagatcccggggctgcgggaggacctggtc
accgagctgatccggtcactgcccaagccgatccgccgcaactacgtgccggcgcccaac
ttcgccagggcgttcctggaccgggtggccgccggccccgagccgctgaccaccgcgctc
gcccgggagctgcaccggatgggcggcacctcggtggccccggaggacttcgaccggtcc
aaggtccccgaccacctcaagcccaccttccgggtggtcgacgagcgcaagcgcaagatc
gccgaggacaaggacctggaggcgctcaagctgcggctcaagcccaggacccgggaggcg
atcaccaaggccgccggatcggtcggcatcgagcagcgcggcgggctcaccgcgtggacc
gtcggcacgctgccgcgcaccttcgaggtacgccgcggcggccagccggtcaaggcgtac
ccggcgctggtggacgagggcgcctcggtcgccgtgcgcctcttcgacaccgcgatcgag
cagtccgaggcgatgtggcgcggtacccggcggctgatcctgctcgggttgccgtcgaat
ccggccaagttcgcgcaggaccggatgggcaacgccgagaagctggcgctctcccgcagc
ccgcacggcagcgtccaggcgctcttcgaggactgcctgaccgcggcggccgaccggctc
atcgcggcgcacggcggcccggcgtgggacgaggaggggttccgcaagctcttcgactcg
gtgcgcgccgacatcaccgacgcgacgctggagaccgtctcggcggtgcagcgggtgctg
gcggcctggcactcctgcgagcgccggctgaaggccaccacgagcctggtgctggtgccc
aacctcaccgacgtcaaggagcagttggcggcgctgatccaccccgggttcgtcaccgcc
gcgggggtacggcgcctgccggacctgctgcgctacctggtcgcggcggaccgccggctc
cagcagatgccctccggcgcgcagcgggaccgggcgcggatggagaaggtccacgagatg
cgggacgagtacgcgcagctgctggccgccttccccgaggggcgccccgtcccggccgag
gtgcgggagatccgctggatgatcgaggagttgcgggtgagctacttcgcccacgccctg
ggcaccgcctacccggtctcggacaagcggatcctcaaggcgatcgacgcggcctggccg
tga
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