Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_3567
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Entry
SCAT_3567 CDS
T01646
Symbol
rpoC
Name
(GenBank) RNA polymerase (beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
sct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCAT_3567 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sct03021
]
SCAT_3567 (rpoC)
03400 DNA repair and recombination proteins [BR:
sct03400
]
SCAT_3567 (rpoC)
Enzymes [BR:
sct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCAT_3567 (rpoC)
Transcription machinery [BR:
sct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCAT_3567 (rpoC)
DNA repair and recombination proteins [BR:
sct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCAT_3567 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
CCB76263
UniProt:
F8JYD3
LinkDB
All DBs
Position
3783170..3787069
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEERRTRDLPSLEAHVSVERQQIEQRRDADIEARQKKLEAD
LAELEAEGAKTDARRKVRDGAEREMKQLRDRAQREIDRLDEVWSRFKSLKVQDLEGDELL
YRELRDRFGTYFQGGMGAAALQKRLESFDLEEEAAKLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDSDEREVRGE
GRAFGSVAEAIMAFDARELTLQAKVDIRFPAGTVPPRGWTAPEPAEGEEPWQPGDAFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVVVAATLDNLKSAGFHWAT
RSGVTVAISDVVVPEAKKTILEGYEAQDEKVQKQYERGLITKEERSQELIAIWTKATNEV
AEAMNDNFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIRELDCGTDRGLKLEIGERG
ADGVLRKSGGVETSVYARSLAEDIVVDGKVLAPAGTDLGDVLIDQLIAHGVQTVKVRSIL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
KGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTRKIVITPDDGSDEIAYGVSKRARL
LVDEGDHVEVGQKLMAGTENPHDVLRILGQRAVQIHLLGEVQKVFTSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERGRFEQENRRVVSEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAIHAKSDALLGLKENVILGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgcggacgacatc
cgtcagtggtcgcacggcgaggttaagaagccggagaccatcaactaccgcaccctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcggtgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccg
gtgacccacatctggtacttcaagggcgtcccgtcccgcctgggctacctgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggagcgccgcacccgtgacctgccgtcgctggaggcgcacgtctccgtcgagcggcag
cagatcgagcagcgccgcgacgcggacatcgaggcccggcagaagaagctcgaggccgac
ctcgccgagctggaggcggagggcgccaagaccgacgcccgccgcaaggtccgcgacggc
gccgagcgggagatgaagcagctgcgcgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtggagccgcttcaagtcgctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttccagggcggcatgggcgccgcggcg
ctccagaagcgcctggagtccttcgacctggaggaggaggccgccaagctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacagcccgatgggcatggtgctcgactgcgtcccggtgatc
ccgccggacctgcggccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagcgtctgctggacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgccgtggccgcccggtgacgggccccggcaaccgtccgctgaag
tcgctctccgacatgctcaagggcaagcagggccgcttccggcagaacctgctcggcaag
cgcgtcgactactccgcccgttcggtgatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgt
acggtcgtgtacgacgtgctggaagaggtcatcgccgagcacccggtgctgctcaaccgg
gcgccgacgctgcaccgcctgggcatccaggcgttcgagccgcagctggtcgaaggcaag
gccatccagatccacccgctggtgtgcaccgcgttcaacgcggacttcgacggcgaccag
atggcggtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgtccggtgacgatgccgacgcaggac
atggtcctgggtctgttcttcctcaccacggactccgacgagcgcgaggtgcgcggcgag
ggccgggcgttcggctcggtggccgaggcgatcatggccttcgacgcccgcgagctgacc
ctccaggcgaaggtggacatccgcttcccggcgggcaccgtgccgccgcgcggctggacg
gcgccggagccggccgagggcgaggagccctggcagcccggtgacgcgttccggctgcgg
accaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcggtacccc
aaggtcgtcgtggcggcgaccctggacaacctgaagtcggccggtttccactgggcgacc
cgctccggcgtcaccgtcgccatctcggacgtcgtggtccccgaggccaagaagacgatc
ctggagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggcctgatc
acgaaggaagagcggtcccaggagctgatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggccatgaacgacaacttcccgaagaccaacccgatcttcatgatggtcgactcg
ggcgcgcgcggaaacatgatgcagatgcgtcagatcgcgggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcggccgatcaaggcgtcgttccgcgagggcctcacc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctcgccgacaccgcgctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgagctggactgcggcaccgaccgcggcctgaagctggagatcggcgagcggggc
gcggacggcgtgctgcgcaagtccggcggcgtcgagaccagcgtgtacgcgcgcagcctg
gccgaggacatcgtggtcgacggcaaggtgctggccccggccggcaccgacctcggcgac
gtgctcatcgaccagctgatcgcgcacggcgtgcagaccgtcaaggtccgctcgatcctc
acctgcgagtccgcggtgggcacctgcgcgatgtgctacggccgttcgctggccaccggc
aagctggtggacatcggcgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
aagggtctgccgcgtgtcgtcgagctcttcgaggcccgtacccccaagggtgtggccccg
atcagcgaggcggccggccgggtccgcatcgaggagaccgagaagacccgcaagatcgtc
atcaccccggacgacggcagcgacgagatcgcctacggcgtctccaagcgcgcccgtctg
ctggtggacgagggcgaccacgtcgaggtcggccagaagctgatggccggtaccgagaac
ccgcacgacgtgctgcggatcctcggccagcgggccgtccagatccacctgctcggcgag
gtccagaaggtcttcacctcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgggtgacgatcatcgagtccggcgacgccgagctgctgccg
ggcgagctggtcgagcgcggtcgcttcgagcaggagaaccgccgggtcgtctccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcgtcgctggcgacc
gagtcgtggctgtccgcggcctcgttccaggagaccacccgggtgctcaccgacgcggcg
atccacgccaagtcggacgcgctgctcggcctgaaggagaacgtcatcctcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtggagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
accggctccggccaggcggtcccgctggaggactacgactacggtccgtacaacgcctga
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