Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_4178
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Entry
SCAT_4178 CDS
T01646
Name
(GenBank) transcriptional terminator Rho (fragment)
KO
K03628
transcription termination factor Rho
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
sct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCAT_4178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sct03021
]
SCAT_4178
03019 Messenger RNA biogenesis [BR:
sct03019
]
SCAT_4178
Transcription machinery [BR:
sct03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCAT_4178
Messenger RNA biogenesis [BR:
sct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCAT_4178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
AAA_25
NACHT
AAA
Rho_RNA_bind
Spore_III_AA
AAA_22
ResIII
VWA_2
Mor
Motif
Other DBs
NCBI-ProteinID:
CCB76874
LinkDB
All DBs
Position
4473823..4474806
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AA seq
327 aa
AA seq
DB search
MRQPKEGERREKFNALVRLDSVNGMAPETGRGRPEFGKLTPLYPQERLRLENEASALTPR
IIDLVAPIGKGQRGLIVAPPKTGKTMIMQSIANAITHNNPECHLMVVLVDERPEEVTDMQ
RSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPA
SGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGN
MELRLDRKLSDKRIFPAVDVDASGTRKEEILLAPEELGIVWKLRRVLHALDSQQAIELLL
DKMKQTKSNAEFLMQIAKTTPGNGNGD
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
gtgcgccagccgaaggaaggcgagcggcgcgagaagttcaacgcgctggtgcggctggac
tcggtcaacggcatggcgccggagaccggccggggccgccccgagttcggcaagctcacc
ccgctgtacccgcaggagcggctgcggctggagaacgaggccagcgcgctgaccccgcgc
atcatcgacctggtcgcgccgatcggcaagggccagcgcgggctgatcgtggccccgccg
aagaccggcaagaccatgatcatgcagtccatcgccaacgccatcacgcacaacaacccc
gagtgccacctgatggtcgtcctggtggacgagcgccccgaagaggtcaccgacatgcag
cggtcggtcaagggcgaggtcatctcctcgaccttcgaccgtccggccgaggaccacacc
accgtcgcggagctcgccatcgagcgggccaagcggctggtggagctgggtcacgacgtg
gtcgtgctgctggactccatcacccgtctgggccgtgcctacaacctggcggcgcccgcc
tccggccgcatcctgtccggtggtgtcgactccaccgcgctctacccgccgaagcgcttc
ttcggcgccgcgcgcaacatcgaggacggcggctcgctgaccatcctggccaccgcgctg
gtcgagaccggctcgcggatggacgaggtgatcttcgaggagttcaagggcaccggcaac
atggagctgcgcctggaccggaagctctccgacaagcgcatcttcccggcggtggacgtg
gacgcgtccggcacccgcaaggaggagatcctgctggcgccggaggagctgggcatcgtt
tggaagctgcgccgggtgctgcacgcgctcgactcgcagcaggcgatcgagctgctgctg
gacaagatgaagcagaccaagtccaacgccgagttcctgatgcagatcgccaagaccacg
ccgggcaacggcaacggcgactga
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