Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_4509
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Entry
SCAT_4509 CDS
T01646
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
sct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCAT_4509 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sct03019
]
SCAT_4509 (pnpA)
03016 Transfer RNA biogenesis [BR:
sct03016
]
SCAT_4509 (pnpA)
Enzymes [BR:
sct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SCAT_4509 (pnpA)
Messenger RNA biogenesis [BR:
sct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCAT_4509 (pnpA)
Transfer RNA biogenesis [BR:
sct03016
]
Prokaryotic type
tRNA degradation factors
SCAT_4509 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_KhpA-B
PCB_OB
KH_2
Motif
Other DBs
NCBI-ProteinID:
CCB77204
UniProt:
F8JUP6
LinkDB
All DBs
Position
4845584..4847809
Genome browser
AA seq
741 aa
AA seq
DB search
MENETHYAEAVIDNGAFGTRTVRFETGRLARQAAGSAVAYLDDETMVLSATTASKHPKDQ
LDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQV
VATIMALHPEHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEEA
VFDMVVAGRTLEDGDVAIMMVEAEATEKTIKLVEGGAEAPTEEVVAAGLEAAKPFIKALC
QAQAELAAKAAKPTAEFPIFLDYQDDVLEALTEAVRDELAQALTIAGKQAREAELDRVKA
LAAEKLLPQFEGREKEISAAYRALTKKLVRERVIKDKVRIDGRGVTDIRTLSAEVEVVPR
VHGSALFERGETQILGISTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSP
KRREIGHGALAERALIPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMSEAIDVPDEMSPNAPRIISIKIPVDKIGEVIGPKG
KMINQIQEDTGAEIAIEDDGTVLIGASEGSAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLMPGKDGLLHISQIRKLAGGKRVENVEDVLQVGAKVQVEIAEIDQRGKLSL
IPVIEGEGDSAAETAEDASAK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaagccgtcatcgacaacggcgctttcggcacccgc
accgtccgcttcgagacgggccgcctcgcccgtcaggccgccggctccgccgtggcctac
ctggacgacgagaccatggtgctgtcggccaccaccgcctcgaagcaccccaaggaccag
ctcgacttcttcccgctgacggtcgacgtcgaggagcggatgtacgccgccgggcgcatc
cccggctcgttcttccgccgcgagggccgcccctccgaggacgccatcctcacctgccgg
ctcatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtcgccaccatcatggcgctccacccggagcacctgtacgacgtggtcgcgatcaacgcc
gcctcggcctcgacgcaactggccggtctgccgttctccggcccgatcggcggcgtccgg
gtcgccctgatccgcggccagtgggtggcgttcccgacccacaccgagctcgaagaggcc
gtcttcgacatggtggtcgccggccgcaccttggaggacggcgacgtcgcgatcatgatg
gtcgaggcggaggccaccgagaagaccatcaagctggtcgagggcggcgccgaggcgccg
accgaggaggtcgtggccgccggtctggaggccgccaagccgttcatcaaggcgctctgc
caggcccaggccgagctggccgccaaggccgccaagccgaccgccgagttcccgatcttc
ctggactaccaggacgacgtgctcgaggcgctcaccgaggccgtccgcgacgagctggcc
caggcgctcaccatcgccggcaagcaggcccgcgaggccgagctggaccgggtcaaggcg
ctcgccgccgagaagctgctgccgcagttcgaggggcgcgagaaggagatctcggccgcc
taccgcgcgctcaccaagaagctggtgcgcgagcgcgtcatcaaggacaaggtccgcatc
gacggccgcggggtcaccgacatccgcaccctgtccgccgaggtcgaggtggtcccgcgg
gtccacggctcggcgctgttcgagcgcggcgagacccagatcctgggcatctccacgctc
aacatgctgcgcatggagcagcagctcgacacgctctcgcccgagacgcgcaagcgctac
atgcacaactacaacttcccgccgtactccaccggtgagaccggccgcgtcggctccccc
aagcgccgcgagatcggccacggcgcgctggccgagcgggcgctgatcccggtcctgccg
acccgcgaggagttcccctacgcgatccgccaggtctccgaggcgctgggctccaacggc
tccacctcgatgggctcggtgtgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctcaaggccccggtcgccggtatcgccatgggcctgatctcccaggagatcgagggtgag
acgcactacgtgacgctgaccgacatcctcggtgccgaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaagacgttcgtcaccgcgctccagctcgacaccaagctcgac
ggcatccccgcctcggtgctggccgccgcgctgaagcaggcccgcgacgcccggctgcac
atcctcgacgtgatgagcgaggccatcgacgtcccggacgagatgtcccccaacgcgccg
cggatcatcagcatcaagatcccggtcgacaagatcggcgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcgccatcgaggacgacggc
accgtcctgatcggcgcctccgagggctccgccgccgaggccgcccgcgccaccatcaac
ggcatcgccaacccgacgatgcccgaggtcggcgagcgctacctgggcaccgtggtgaag
accaccaccttcggcgccttcgtctcgctcatgccgggcaaggacggcctgctgcacatc
tcgcagatccgcaagctcgctggcggcaagcgcgtggagaacgtcgaggacgtgctgcag
gtcggcgccaaggtccaggtcgagatcgccgagatcgaccagcgcggcaagctgtcgctg
atcccggtgatcgagggcgagggcgactccgccgccgagaccgccgaggacgcgtcggcc
aagtga
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