Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_5020
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Entry
SCAT_5020 CDS
T01646
Name
(GenBank) conserved protein of unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sct03016
]
SCAT_5020
Enzymes [BR:
sct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SCAT_5020
Transfer RNA biogenesis [BR:
sct03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SCAT_5020
Prokaryotic type
tRNA splicing ligases
SCAT_5020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCB77708
UniProt:
F8K0I1
LinkDB
All DBs
Position
complement(5412097..5413542)
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AA seq
481 aa
AA seq
DB search
MKPAEHMVAEAVAETPFRYRIPRRGAMRVPGVVFATRRLLPEASGDQALQQVADVATLPG
IVTASYAMPDVHWGYGFPIGGVAATDIAEGGVVSPGGVGFDISCGVRLLAAGCDRDGLGR
RLERLMDGLGRRVPRGAGRGGVWHVSRAELAEVLAHGARYAVERGHGVPRDLERCEDGGT
LPGADPGQVGERAVDRGLGQVGSLGSGNHFLEVQAVDVVHDAAAARAMGLAPGQVCVMIH
CGSRGLGHQICTDHVRAMDPVMPRYGIEVPDRQLACAPVDSGPGRAYLAAMAAAANYARA
NRQLLAEAARRAFAESVGCGLDLVYDISHNMAKLERHPVGEDAAPRLLCVHRKGATRALP
PGHPDLPADLSAVGQPVLIPGTMGTASYVLTGVADGDAWHSTCHGAGRVRSRHRAAREID
GHRLRGELEAHGVAVRASSWRGLAEEAPQAYKDVDEVVAAAEGAGLCRKVARLVPLGVVK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
gtgaagccggccgaacacatggtggccgaggcggtcgccgagacaccgttccgctaccgc
atcccgcgccgtggcgcgatgcgggtgccgggggtggtcttcgccacccgcaggctgctg
ccggaggcctccggcgaccaggcgctccagcaggtggccgacgtggccacgctgcccggc
atcgtcaccgcctcctacgccatgcccgacgtgcactgggggtacgggttcccgatcggc
ggggtcgccgccaccgacatcgccgagggcggtgtggtctcccccggcggggtggggttc
gacatctcctgcggggtgcggctgctggccgccgggtgtgaccgggacgggctcgggcgg
cggctggagcggctgatggacggcctcgggcggcgggtgccgcgcggcgccggacgcggc
ggggtgtggcacgtcagccgcgccgagctggccgaggtgctggcgcacggcgcccgttac
gcggtggaacgcggccacggtgtcccccgcgacctggaacgttgcgaggacggcggcacg
ctgcccggcgccgaccccggccaggtgggcgaacgcgccgtcgaccgggggctgggccag
gtcggcagcctcggttcgggcaaccacttcctggaggtgcaggcggtcgacgtggtgcac
gacgcggcggcggcgcgggcgatggggctggcgccggggcaggtctgcgtgatgatccac
tgcggttcgcgcggcctgggccaccagatctgcaccgatcacgtgcgggcgatggacccg
gtcatgccgcgctacggcatcgaggtgcccgatcgccagctcgcctgcgccccggtggac
tccgggcccggccgggcgtatctggccgcgatggcagccgccgccaactacgcccgcgcc
aaccggcagttgctcgccgaggcggcccggcgggccttcgccgagagcgtcggctgcggg
ctcgacctggtctacgacatctcgcacaacatggccaagctggagaggcacccggtgggc
gaggacgccgccccgcgcctgctgtgcgtccaccgcaagggcgccacccgggcgctgccg
cctggccaccccgacctgccggcggacctgtccgcggtgggccagccggtgctgatcccc
ggcaccatgggcaccgcctcctacgtgctgaccggcgtggccgacggggacgcgtggcat
tccacctgccacggcgccggacgcgtccgcagccgccaccgcgcggcccgcgagatcgac
ggccaccggctccgcggcgaactggaggcccacggcgtcgccgtccgcgcctcctcctgg
cgcggcctcgccgaggaggcaccgcaggcgtacaaggacgtcgacgaggtggtggccgcc
gccgagggggcgggactgtgccgcaaggtggcccgcctcgtaccgctcggcgtggtcaag
gggtga
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