Sorangium cellulosum So0157-2: SCE1572_12860
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Entry
SCE1572_12860 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCE1572_12860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scu03019
]
SCE1572_12860
03400 DNA repair and recombination proteins [BR:
scu03400
]
SCE1572_12860
Enzymes [BR:
scu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCE1572_12860
Messenger RNA biogenesis [BR:
scu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCE1572_12860
DNA repair and recombination proteins [BR:
scu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCE1572_12860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Glyco_trans_1_3
MarR_2
ADH_zinc_N_2
ResIII
IPPT
EccE
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
AGP35331
UniProt:
S4XSG2
LinkDB
All DBs
Position
3554469..3556436
Genome browser
AA seq
655 aa
AA seq
DB search
MDQPTPPRPDLLDVLEARFGFRDLRPGQRAVLDALLSGHSALAVFPTGGGKSLCYQLPAL
LLDGVTIVISPLIALMKDQIDFLTARGIAAVRLDSSLSADEAAEAHRDLRSGKTKLLYVA
PERFVSERFMALLKELKIALFAVDEAHCISEWGHNFRPDYLRLADTARALGVPRVLALTA
TATPGVVRDVCATFGIREEHAVVTGFYRPNLEIRATAVSAPARDRILIERLRSRPPGSTI
VYVTLQKTAEHVAEQLASAGLPARAYHAGMDAEERARVQDDWMQSDRGVVVATIAFGMGI
DKADVRYVDHYNLPKSLESYSQEIGRAGRDQAPSAVELFVCGDDLPVLENFAYGDTPTAE
ALHGVVGAVLDAPQVEIGLHALSARHDVRPLVLRTALTYLELMGAVRQLTPFYAGYEVRL
HRKLEEVVATVKGEPARFLEALFGHAKKGRVLYAIDPAAAAAALDQPRERVVRALEYLER
QGLAELKASDLRHRFVRVAPPDDAPALVGELLARFARREDAEIARVRQVIALITAERCHA
AALAEYFGERLDAACGRCTFCRTRVALRLPEPPRAPPMPAGLDVAAFTALRAAHGAALGH
PRQAARFLCGLSSPATTQAKLARHPLFGVLVARRFSEVLDWCAGLPLLAGANVRG
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
ttggaccagccgactcccccccgcccggatctgctcgacgtgctcgaggcgcggttcggg
ttccgcgatctccgcccaggccagcgcgcggtcctggacgccctgctctcgggccacagc
gcgctcgcggtcttcccgacgggcggcggcaaatcgctctgctaccagctccccgcgctg
ctcctcgacggggtcacgatcgtcatctctccgctgatcgcgctgatgaaggatcagatc
gatttcctcacggcgcgcggcatcgccgcggtccggctcgactcgtcgctgtcggccgac
gaggcggcggaggcgcacagggatctgcgctcgggcaagacgaagctgctctatgtcgcc
cccgagcggttcgtgagcgagcgcttcatggcgctgctgaaagagctcaagatcgccctg
ttcgcggtggacgaggcccactgcatctcggagtgggggcacaacttccgccccgactac
ttgaggctcgcggacaccgcccgggcgctcggcgtgccgcgcgtgctcgcgctgacggcc
accgcgacgcccggggtcgtgcgcgacgtctgcgccacgttcggcatccgcgaggagcac
gcggtggtcaccggcttctaccggccgaacctcgagatccgcgcgacggcggtgagcgcg
cccgcgcgcgaccggatcctgatcgagcgcctgagatcccggccgcccggctccaccatc
gtgtacgtcacgctccagaagaccgccgagcacgtggccgagcagctcgcttcggcgggg
ctgccggcgcgcgcctaccacgccgggatggacgcggaggagcgcgcgcgcgtgcaggac
gactggatgcagagcgaccgcggcgtcgtggtcgccaccatcgcgttcgggatggggatc
gacaaggccgacgtgcgttatgtcgaccattacaatctcccgaagagcctcgagagctac
agccaggagatcggccgcgcgggcagggatcaggcgccctcggcggtcgagctcttcgtg
tgcggcgacgatctgccggtcctcgagaacttcgcttatggcgatacgccgaccgcggag
gcgctccacggggtggtcggcgccgtgctcgacgcgccccaggtggagatcggcctgcac
gcgctgtcggcgcgccacgacgtccggccgctcgtgctccgcaccgcgctgacctacctc
gagctgatgggcgcggtccggcagctcacgccgttctacgccggctacgaggtgcggctc
caccgcaagctcgaggaggtcgtcgcgacggtgaagggcgagccggcgcggttcctcgag
gcgctcttcggccatgcgaagaaggggcgagtcctgtacgcgatcgatccggcggccgcc
gccgcggcgctggaccagccgcgcgagcgggtggtgcgcgcgctcgagtacctcgagcgg
caggggctcgcggagctcaaggcgtcggacctgcggcaccgcttcgtgcgcgtcgcgccg
ccggacgacgcgcccgcgctcgtcggcgagctcctcgcgcggttcgcgcggcgcgaggac
gcggagatcgcgcgcgtgcggcaggtgatcgcgctgatcaccgcggagcgctgtcacgcc
gccgcgctggccgagtacttcggcgagcgcctcgacgccgcgtgcgggcgttgcaccttc
tgccgcacccgggtcgccctgaggctgccggagccgccgcgcgcgccgccgatgccggcg
gggctcgacgtcgccgcgttcacggcgctgcgcgcggcgcacggggccgccctgggtcac
cctcgccaggcggcgcgcttcctctgcggcctctcgagcccggcgaccacccaggccaag
ctcgcgcgccatccgctcttcggcgtccttgtcgctcgccggttctccgaggtgctcgac
tggtgcgccgggctccccctcctcgccggcgcgaacgtgaggggctga
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