Sorangium cellulosum So0157-2: SCE1572_15395
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Entry
SCE1572_15395 CDS
T02718
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCE1572_15395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scu03400
]
SCE1572_15395
DNA repair and recombination proteins [BR:
scu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCE1572_15395
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCE1572_15395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_21
AAA_29
AAA_16
UvrA_DNA-bind
AAA_25
SMC_N
nSTAND1
RsgA_GTPase
AAA_22
AAA_33
NACHT
AAA_23
nSTAND3
DnaJ_CXXCXGXG
ATPase
cobW
Viral_helicase1
NTPase_1
AAA_28
NB-ARC
Cytidylate_kin
T2SSE
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
AGP32299
UniProt:
S4XIB7
LinkDB
All DBs
Position
4303065..4308419
Genome browser
AA seq
1784 aa
AA seq
DB search
MQSICLRGARTHNLQGIDLDFRPGELVAIAGVSGAGKSSLALDTLYSEGQRRFVESFSPY
ARQFLERLERPPIDALEPVAAGVAVDRRAPVKSSRSTVATMADLEPYFCALFAREAVPVC
PSCEAPAARTDPVKAAELAASQHEGATALVTYPVAVAGTERFLDVRESLLAAGYRRLLVR
GEARDLDSVAPSEAMSGTDKVEVIVDRVRVAPRERRRLGAAIEEAWKGGGGDASLHLQRK
AEEPGGNGAGSTRLRLVRGLACPSCARAFDPPRPGLFSYQSPTGACPSCRGFGRTLGIDY
DKVIPDPSKSIAGGAIRPWNGRSTTWERKVLRAFCERNGIRTDRPWRDLSEAQRALVLEG
EGTWSQGKYPGVKAWFRWLETRTYKMHVRVLLARYRTYDVCGACHGKRLSPESLLYRVGG
LDLAAWHELELREARARLEAERPQTGQGEMARRELIARLGYLERVGLGYLSLSRQARTLS
GGEAQRVALTAALGTSLTGALFVLDEPTVGLHPTDIPPLIAAMRELADRGNAVLVIEHEP
LVIRASDRVVELGPGAGKQGGRVTFDGSPEGLAAQRSLPAAPAERRSPSGKIAIHGAREN
NLRDVSVDVPLGVVVAITGPSGSGKSTLVNDVLYRHIARARGYKDVEAPGLYRRIEGTAD
IRTVTLVDQAPLGRTSRGNPATYTGAWNRIRALFAERPEAAARDLGPGHFSFNVALGRCE
ACAGEGSETIEMQFLADVSLTCPTCKGKRFRDEVLEVKLGGRSVADVLDLSIDEAFAAFE
REPAVRRALAPLKQLGLGYLTLGQPLSTLSGGEAQRLKIARALGEPCAGALFLLDEPSAG
LHPEEVKHLNASLSVLVAEGASVIVVDHDLDVIAAADWVIDLGPGAGSEGGSVVAEGTPE
AVARTATRTGGALAEWFALRGDGAAPRPRRGAKAAAPAAAPKSGKRNGNAAARPSLDRRR
IEVEGAREHNLAEVSTVIPHGELVVVTGPSGSGKSTLAFDVVFAEGQRRFLETLTPYARQ
FLPTLPRPDVDRVTGVPPSIALEQRTTRSGANSTVATVTEIAHYLRLLYAKVGEARCPDC
DVPIAARSPDEVYRSLLATRGARTLLAPAVVARKGTYLDVFTAAARAGITRALADGEPCA
TDSPPRLDKRREHSIDLVIYEGRMDALDRALFDRALAFGRGAVKLAGGRGGEQLLSTTRT
CPRCGVGVPELDPRWFSFNTKQGRCEACEGTGASDFDDDALATPDPCEACGGSRLAPIPR
AVRLAGERYHQASGRSVAAAAAWARGLRFTGDRALIAEAPHKELCRRLDFVCEVGLGYLT
LDRRASTLSGGEMQRLRLAAQLGSGLTGALYVLDEPTIGLHPRDTDRLLSNLRRLASMGS
TVLMVEHDADTIRAADHLIDLGPSGGRKGGRIVAAGPSREVLANPDSPTARALAGEDALL
SARPARPPAREHIELLGARAHNLQGDALRLPAGRMTVVAGVSGSGKSTLIQKVLYPAARR
ALKLEAPEPGPHKALRLPKSILRAVAVDQSPIGRTPRSIPATFLGVWDEVRKLYAACPDA
QVRGYGPARFSFNTASGGQCPACEGQGVIAHEMSFLPDVTTPCEACGGARFEPATLDVRY
LGLSVGEVLDLTAEEAVEVFAAHPRIRAPLSTMCDLGVGYLHIGQGSHTLSGGEAQRLKL
AAELTAGARPKPTLYVLDEPTTGLHLADVTRLVRVLDRLVERGDTLVIIEHHPAVIACAD
HVVELGPEGGAGGGRIVAEGTPRELSRQPTATGEVLKRIFAKAT
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccatctgtctccgcggcgcccgcacgcacaacctccagggcatcgacctcgac
ttccggcccggcgagctcgtggccatcgccggcgtgtccggcgccggcaagtcctcgctc
gcgctcgacacgctctactccgaagggcagcgccggttcgtcgagagcttcagcccgtac
gctcgccagttcctcgagcggctcgagcggccgccgatcgacgcgctcgagcccgtggcg
gccggcgtcgccgtcgaccgccgcgcgccggtcaagagctcgcggtcgaccgtcgccacg
atggccgatctcgagccgtacttctgcgcgctcttcgcgcgcgaggcggtgcccgtctgt
ccgtcctgcgaggcgccggccgcgcggaccgacccggtaaaggcggccgagctcgccgcg
agccagcatgagggcgcgaccgcgctcgtcacgtatccggtcgccgtcgcggggaccgag
cggttcctcgacgtgcgcgagtcgctgctcgccgccggctaccggcgcctgctcgtccgc
ggcgaggcgcgcgacctcgacagcgtggcgccctccgaggcgatgagcggcaccgacaag
gtcgaggtcatcgtcgatcgcgtccgcgtcgccccgcgggagcgccggcgcctcggcgcc
gccatcgaggaggcgtggaagggcgggggaggcgacgcgtcgctccacctgcagcgcaag
gccgaggagccgggcggcaacggggcggggtcgacgcggctccggctcgtgcgcgggctc
gcctgcccctcgtgcgcgcgcgccttcgatccgccgcgccccgggctcttctcgtaccag
tcgccgaccggcgcgtgcccctcgtgccgcggcttcggccgcaccctcggcatcgactac
gacaaggtgatcccggacccgtcgaaatcgatcgcgggcggcgcgatccgcccctggaac
ggccgctccaccacctgggagcggaaggtgctccgcgcgttctgcgagcggaacgggatc
cgcaccgatcggccgtggcgtgacctctccgaggcgcagcgcgcgctcgtgctcgagggc
gagggcacgtggagccagggcaagtaccccggcgtgaaggcctggttccgctggctcgag
acgcgcacctacaagatgcacgtccgcgtgctgctcgcgcgctaccgcacctacgacgtg
tgcggcgcgtgccatggcaagcggctctcgcccgagtcgctcctttaccgcgtcggcggc
ctcgatctcgccgcgtggcacgagctcgagctccgcgaggcgcgcgcgcggctcgaggcc
gagcgcccccagacgggccagggggagatggcgcgccgcgagctcatcgcgcggctcggc
tacctcgagcgcgtcgggctcggctacctctcgctctcccgccaggcgcgcacgctctcg
ggcggcgaggcgcagcgcgtcgcgctcaccgcggcgctcggcacgtcgctgacgggcgcg
ctcttcgtgctcgacgagccgaccgtcggtctgcatccgacggacatcccgccgctcatc
gcggccatgcgcgagctcgccgaccgcggcaacgccgtgctcgtcatcgagcacgagccc
ctcgtcatccgggcgagcgatcgcgtcgtcgagctcggccccggcgcgggcaagcagggc
ggtcgcgtcaccttcgacgggtcccccgaggggctcgccgcgcagaggtcgctgcccgcg
gcgcccgcggagcgaaggtcgccgagcggcaagatcgcgatccacggcgctcgcgagaac
aacctgcgcgacgtctccgtcgacgtcccgctcggcgtcgtggtggcgatcacggggccg
agcggctcaggcaagagcacgctggtgaacgacgtgctctaccggcacatcgcgagggcc
cgcggctacaaggacgtcgaggcgccgggcctgtaccggcgcatcgagggcacggccgac
atccgcaccgtcacgctcgtcgatcaggcgccgctcgggcgcacctcgcggggcaacccc
gcgacctacaccggcgcgtggaaccgcatccgcgcgctcttcgccgagcggcccgaggcg
gcggcgcgggatctcgggcccggccacttctcgttcaacgtcgcgctcgggcgctgcgag
gcgtgcgccggcgaggggagcgagacgatcgagatgcagttcttggccgacgtgtcgctg
acctgcccgacctgcaagggcaagcgcttccgcgacgaggtgctcgaggtgaagctcggc
ggccgctcggtcgccgacgtgctcgatctctcgatcgacgaggcgttcgcggccttcgag
cgggagcccgcggtccggcgggcgctcgcgccgctcaagcagctcggcctcggctacctc
acgctcggccagccgctctcgacgctctccggcggcgaggcgcagcggctcaagatcgcg
cgcgcgctcggcgagccctgcgcgggcgcgctcttcctcctcgacgagccgagcgccggc
ctgcacccggaggaggtgaagcacctcaacgcttcgctctcggtgctcgtggccgagggc
gcctccgtgatcgtggtcgaccacgacctcgacgtcatcgcggcggccgactgggtcatc
gatctcgggccgggcgcgggcagcgagggcgggagcgtggtcgcggaggggacgcccgag
gcggtggccaggacggcgacgcggaccggcggcgcgctggccgagtggttcgcgctgcgg
ggcgacggcgcggcgccgaggccgcgccgcggcgccaaggccgcggcgcccgccgccgcc
ccgaaatccggcaagcgcaacggcaacgccgcggcgcgcccgtcgctcgatcggcggcgc
atcgaggtggagggcgcccgcgagcacaacctcgccgaggtctcgacggtgatcccgcac
ggcgagctcgtcgtcgtgaccggcccgagcggctccggcaagagcacgctcgcgttcgac
gtggtcttcgccgagggccagcggcgcttcctcgagaccttgaccccctacgcgcgccag
ttcctccccacgctgccgcggccggacgtcgatcgcgtcaccggcgtacccccgtcgatc
gcgctcgagcagcgcaccacgcgctccggcgccaactccaccgtcgcgaccgtgaccgag
atcgcgcactacctgcggctgctctacgccaaggtcggcgaggcgcgctgcccggactgc
gacgtgccgatcgcggcgcgctcgccggacgaggtctatcgttcgctgctcgcgacgcgc
ggcgcgcggacgctgctcgcccccgcggtcgtggcgcgcaaggggacgtacctcgacgtc
ttcaccgcggccgcccgcgccggcatcacccgcgcgctcgccgacggcgagccgtgcgcg
accgacagccctccccgcctcgacaagcgccgcgagcactcgatcgacctcgtgatctac
gaggggcgcatggacgccctcgatcgcgcgctcttcgatcgcgccctcgcgttcggtcgg
ggcgcggtgaagctcgccggcggccgcggcggcgagcagctgctctccacgacgcgcacc
tgcccgcgctgcggcgtcggcgtcccggagctcgatccccgctggttctcgttcaacacg
aagcagggccgctgcgaggcgtgcgaggggaccggcgcctcggacttcgacgacgacgcg
ctcgcgacgcccgatccgtgcgaggcgtgcggcggctcgcgcctcgcgccgatcccccgg
gccgtccggctcgccggcgagcgttaccaccaggcgtcgggccggtcggtggcggcggcc
gccgcctgggcgaggggcctgcgcttcacgggcgatcgcgcgctgatcgccgaggcgccg
cacaaggagctctgccgccggctcgacttcgtctgcgaggtgggcctcggctacctcacg
ctcgatcggcgcgcgtcgaccctctcgggcggcgagatgcagcgcctgcggctcgcggcg
cagctcggcagcggcctcaccggggcgctgtacgtcctcgacgagccgaccatcggcctc
cacccgcgcgacaccgatcggctgctctccaacctgcggcggctcgccagcatggggagc
accgtgctcatggtggagcacgacgccgacacgatccgcgccgcggaccacctgatcgat
ctcggcccctcgggcggccggaagggcggcaggatcgtcgcggcgggcccgtcgcgcgag
gtgctcgcgaaccccgactcgccgaccgcgcgcgcgctcgccggcgaggacgccctgctc
agcgcgcgcccggcgcgcccgccggcgcgcgagcacatcgagctcctcggcgcccgcgcg
cacaacctccagggcgatgcgctccggctccccgcgggccggatgacggtggtcgccggc
gtgtccggctccgggaagagcacgctcatccagaaggtgctctaccccgccgcgcgccgc
gcgttgaagctcgaggcgcccgagccgggcccgcacaaggcgctgcggctgccgaagagc
atcctgcgcgcggtggccgtcgaccagtcgcccatcggccggacgccgcgctcgatcccg
gcgacgttcctgggcgtctgggacgaggttcgcaagctctacgccgcctgtcccgacgcg
caggtgcgcggctacggccccgcgcggttctccttcaacacggcctcgggcgggcagtgc
cccgcgtgcgaggggcagggcgtcatcgcgcacgagatgtcgttcttgcccgacgtgacc
acgccgtgcgaggcgtgcggcggcgcgcgcttcgagccggcgacgctcgacgtgcgctac
ctcggcctgtccgtcggcgaggtcctcgatctcaccgccgaggaggcggtcgaggtcttc
gcggcgcacccgaggatccgcgcgccgctctcgaccatgtgcgatctcggcgtgggctac
ctccacatcggccagggctcgcacacgctctcgggcggcgaggcccagcggctcaagctc
gcggcggagctgacggccggcgcgcggcccaagccgacgctctacgtcctcgacgagccc
acgaccggcctgcacctggcggacgtgacgcgcctcgtccgcgtgctcgatcgcctggtc
gagcgcggcgacacgctggtgatcatcgagcaccacccggcggtcatcgcctgcgcggat
cacgtggtcgagctgggcccggagggcggcgccggcggggggcgcatcgtcgccgagggc
accccgcgcgagctttcgcgtcagccgacggcgacgggcgaggtgctgaagaggatcttc
gcgaaggcgacgtga
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