Sorangium cellulosum So0157-2: SCE1572_15640
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Entry
SCE1572_15640 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCE1572_15640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scu03019
]
SCE1572_15640
Messenger RNA biogenesis [BR:
scu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCE1572_15640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AGP35812
UniProt:
S4XRI4
LinkDB
All DBs
Position
complement(4365709..4367298)
Genome browser
AA seq
529 aa
AA seq
DB search
MLIEEDGRRVLVDCGVMFPNDQVLGVEVAIPDLSYVREAGGVDAVIVTHGHEDHIGGLPS
LLREFPVPVYGTRFTLRLVRERLVEHGIDVPLREVEPQRHFTAGPFRAEPLRVTHSIPDA
VGFAIETGEGILIHTGDYKIDLTPVGGERLDLGRFAEYGRAGVAALLSDSTNSERDGWSV
SETAVAEGFLRPFREAKGRILVALFASNVHRVQSVLDLAAQLGRKVVLAGRSLATNTRIA
EEIGILTIPPGVLVDDATAAALPRERLIVLASGAQGEPNSALARMAVGDHHRLRVDPGDT
VIFSSRAIPGNEIAVSQLANRLARRGAVVLDRGLDPIHASGHAQAEEQKVLLDAVRPEHF
VPIHGEYRMLLAHARTALRMGVPASGVFVVEDGESLVIEDGRMRLGDAVKSGRVWLDGRG
GLDVSELVLREREQISDQGLVMVLVVADRKTGEVLRGPELLGRGVAHFEEGGPLFAAALA
SARDALAALSPGARTLAPALEDALSRGVRRVFRREASRRPAVLPLAVLL
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgaggaggatggccgccgcgtgctcgtcgactgcggcgtcatgttccccaac
gaccaggtgctcggcgtcgaggtggcgatccccgacctcagctacgtgcgcgaggcgggc
ggggtcgacgcggtgatcgtgacgcacggccacgaggatcacatcggcgggctgccgtcg
ctgctgcgcgagttcccggtccccgtgtacgggacgcgcttcaccctccggctcgtgcgc
gagcgcctcgtcgagcacggcatcgacgtgccgctccgcgaggtcgagccccagcggcac
ttcacggcgggcccgttccgcgccgagcccctgcgcgtgacccactccatccccgacgcg
gtcggcttcgcgatcgagacgggcgagggcatcctcatccacaccggcgactacaagatc
gatctcacccccgtgggcggcgagcggctcgatctcggccgcttcgccgagtacggccgc
gccggcgtggcggccctcctgtccgactccaccaactccgagcgcgacggctggtcggtg
agcgagaccgcggtggccgaggggttcctccggccgttccgcgaggcgaagggccgcatc
cttgtcgcgctgttcgcctccaacgtccaccgggtccagagcgtcctcgacctcgccgcc
cagctcggccgcaaggtcgtgctcgccgggcgcagcctcgcgaccaacacgcggatcgcc
gaggagatcggcatcctgaccatcccccccggcgtgctcgtcgacgacgccacggcggcc
gcgctcccgcgcgagcgcctcatcgtgctcgcctcgggcgcgcagggcgagccgaacagc
gcgctcgcgcgcatggccgtcggcgatcaccaccggctgcgggtcgacccgggcgacacg
gtgatcttctcgtcccgcgccatccccggcaacgagatcgccgtcagccagctcgccaac
cgcctggcgaggcgcggcgccgtggtgctcgatcgcggcctcgatccgatccacgcgagc
ggccacgcccaggctgaggagcagaaggtgctcctcgacgcggtccggccggagcacttc
gtcccgatccacggcgagtaccggatgctgctcgcccacgcgcgcacggcgctccggatg
ggcgtgccggcgtcgggggtcttcgtggtcgaggacggcgagtcgctggtcatcgaggac
ggccggatgcggctcggggacgcggtgaagagcgggcgcgtgtggctcgacgggcgcggc
gggctcgacgtctcggagctggtgctgcgcgagcgcgagcagatctcggatcagggcctc
gtgatggtgctggtcgtggccgaccgcaagacgggcgaggtcctgcgcggccccgagctc
ctggggcgcggggtggcgcacttcgaggagggtggcccgctgttcgcggccgcgctcgcg
agcgcgcgcgacgcgctcgcggcgctgtcgccgggggcgcgcacgctggcgccggcgctg
gaggacgcgctcagccgcggcgtgcggcgggtgttccggcgcgaagcctcgcgccgcccc
gccgtgctccccctggccgtgctcctgtga
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