Sorangium cellulosum So0157-2: SCE1572_15740
Help
Entry
SCE1572_15740 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCE1572_15740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scu03400
]
SCE1572_15740
Enzymes [BR:
scu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCE1572_15740
DNA repair and recombination proteins [BR:
scu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCE1572_15740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_30
UB2H
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AGP35828
UniProt:
S4XYY0
LinkDB
All DBs
Position
complement(4398600..4402385)
Genome browser
AA seq
1261 aa
AA seq
DB search
MPSERSLLSPASSPLTATLSELSGGLDDTASNDTSAGGPPASTPADHEPLPSFDLPSDRR
IVTPRDLAAELAAAPPGTFHVTGSAGSAGALVIRRLVAAAAGRRILALTPDIDSARALAA
DASFLLADRNADDAEATGSTASGCVLLYVPNEASPYADVNPDRRGAQTRLATLFHLGMDL
PWSVLVCPVAALARKVVPKDEVTEHAELVIAEQEMDRDALSARLGAAGYVRSPLVEDPGS
FAVRGALLDVWAPSAELPVRIDFYGDVIASIKTFNPDDQRTIADVKEVWLPPAREAILTP
GNVERARQRVRAACDAIDFPSTKARALVDDVASGRAFFGAEGYLPAYIDLAAFSSYVPGD
ALVVLEDPASLTAALRDELGRAAADRSHKDREPHFPLGAFYEDEAHVASWLGDRTVVALH
RTGVEGAVESQDSLERFEVVPADAPSIAARDQSDLERAIKAARASRGKHGALDPLVRRVV
AWQEAGLRVLIAARAQTQVERLVALLRHRDVRVKANLGPFDPAFLDGSSSTVPRDTALVV
TGSLARGVIAPAEGLALVTEEEIFGARAHRRAARASASAAKPAQAFLEDLRNLGVGDYVV
HVEHGIGRYLGLVHKQVGATTVDLIAVEYAGGDKLYLPVYRLNQIQKFSGGEGAPKLDRL
GGQTFAKTKARVEKSVRKMADELLRLYAERRAATAEPIPSPDDDYRAFEATFPFDETPDQ
ARAITEVAADLESGRPMDRLVCGDVGFGKTEVAIRAAFRAANAGRQVAVLCPTTVLAQQH
YLSFKSRMASYPIEVRAMSRFQTKQEQDEVSRGLRDGSVDVVIGTHRLLSKDIHFKRLGL
LVVDEEQRFGVTHKERIKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSIISTPPVDRRA
IRTVVTRHDEAVLREAVLRELGRGGQVFYVYNRVEGLYERAARLAELVPSARICVAHGQM
SEQNLEQAMLDFVEGRYDVLCATAIIESGLDIPRANTILIDRADMFGLSQLYQLRGRVGR
SKERAYCYLIVPPPNAMTDEARARIEALERHTELGSGFQIASLDLELRGAGDLLGAEQSG
TVAQVGFELFCQMLDEAVHELRGDPVVHDVDTELSFDADALLPEEYISDVGVRLSLYKRF
ASAGSAEDVQDLAVEMEDRFGPPPLEARRFVHLMRLKTELRRLKALACEASAKGVTLHLR
EDTPLDHAKVLRLVQPKGSPYRISPDMRLSRRPRDGEVFTSGLEATDKLLSELANCLKDG
A
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgagcgctccctcctctcccccgcaagctccccactcaccgctaccctcagc
gagctctcaggcggcctcgacgacaccgcctcgaacgacacctccgccggcggccctccc
gcctccacgccggccgaccacgagccgctcccgtcgttcgacctcccctcggaccgccgg
atcgtcaccccccgcgatctcgccgcggagctcgccgctgcgccgcctggcacattccac
gtgacgggctcagccggctcggccggcgcgctcgtcatccgtcgcctcgtggcagcggcc
gccggccgccgcatcctcgccctcacccctgacatcgacagcgcccgcgccctggcagcc
gacgcctcgttcctgctcgccgaccgaaacgccgacgacgccgaggccaccggctccacg
gcctctggctgcgtcctcctctacgtgcccaacgaggccagcccctacgcagacgtcaac
ccggaccgccgcggcgcccagacgcgcctcgccacgctcttccacctcggcatggacctg
ccgtggtcggtcctcgtctgccccgtcgccgcgctcgcccgtaaggtcgttcccaaggac
gaggtcactgagcacgccgagctcgtcatcgccgagcaggagatggatcgcgacgcgctc
tccgcccgcctcggcgccgctggctacgtgcgcagccccctcgtggaagaccctggctcc
ttcgccgttcgcggcgccctcctcgatgtctgggcgccctcggccgagctgccggtgcgc
atcgatttttacggcgacgtcatcgcttcgatcaagaccttcaaccccgacgatcagcgc
acgatcgccgacgtgaaggaggtctggctgccgccggcccgcgaggcgatcctcacgcca
ggcaacgtcgagcgcgcccgccagcgcgtccgtgccgcgtgcgacgccatcgacttcccc
tcgaccaaggcgcgcgccctggtcgacgacgttgccagcggccgtgccttcttcggggcc
gagggctatttgccggcgtacatcgacctcgccgcctttagctcgtacgtgcccggcgac
gcgctcgtcgttctcgaggatccggcctccctcaccgccgccctgcgcgacgagctcggt
cgcgccgccgccgaccggagccacaaggatcgcgaaccgcacttcccgctcggcgccttc
tacgaggacgaggcgcacgtcgcgtcgtggctcggggaccgcaccgtggttgcgctacat
cgcaccggggttgagggcgccgtggaaagtcaggactcgctggagcgcttcgaggtcgtc
cccgcggatgccccctcgatcgccgcgcgggaccagtcggacctcgagcgtgccatcaag
gcggcccgcgcttcacggggcaagcatggcgctctggacccgctcgtccgccgcgtcgtc
gcatggcaagaagcgggcctacgggtgctgatcgccgcacgcgcacagacccaggttgag
cgcctggttgcgctgctccgccatcgagacgtgcgggtgaaggccaacctcggtccgttc
gacccggcgttcctcgacggcagcagctcgaccgtcccacgcgacaccgccctcgtcgtc
accggctcccttgcgcgcggcgtcatcgctccggccgaggggctagcgctggtcacggaa
gaggaaatcttcggggctcgcgcccaccgccgcgccgctcgggcctccgcctccgccgcc
aagcccgcgcaggccttcctcgaggacctccgcaacctgggcgttggcgactacgtcgtc
catgtagagcacggcatcggccggtacctcggcctcgtccacaagcaggtcggcgcaacc
acggtcgacctcatcgccgtcgagtacgccggcggcgacaagctctacctgccggtctac
cgcctcaaccagatccagaaattcagcggcggcgaaggcgcccccaagctcgatcggctc
ggcgggcagacctttgccaagacgaaggcgcgggtcgagaagagcgtccgtaagatggcc
gacgaactcctgcgcctgtacgccgagcgccgcgccgccacggccgagcccattccgtct
ccggacgacgattaccgtgccttcgaagcgactttccccttcgacgagacgcccgaccag
gcgcgggccatcaccgaggttgcggccgacctcgagtccggccgtcccatggaccgcctc
gtctgcggcgacgtcggcttcggcaagaccgaggttgccatccgcgccgccttccgcgcc
gccaacgccggccggcaggtggccgtcctctgtccaaccacggtgctcgcgcagcagcac
tacctcagcttcaagtcccgcatggcctcctaccccatcgaggtccgcgccatgtcccgc
ttccagaccaagcaggagcaggacgaggtctcccgcggcctccgcgacggcagcgtcgac
gtcgtcatcggcacgcaccgcctcctctccaaggacatccacttcaagcggctcggcctg
ctcgtcgtcgacgaggagcagcgcttcggcgtcacccacaaggagcgcatcaaggccctc
aagaccaacgtcgacgtcctcacgctctcggccacccccatcccccgcaccctccagatg
gcggtctccggcctccgcgacatgtcgatcatctccacccccccggtcgaccgccgcgcc
atccgcaccgtggttacccgccacgacgaggccgtcctccgcgaggccgtcctccgcgag
ctcggccgcggcggccaggtcttctacgtctacaaccgcgtcgagggcctctacgagcgc
gccgcccgcctcgccgagctcgtcccgagcgcccgcatctgcgtcgcgcacggccagatg
agcgagcagaacctcgagcaggccatgctcgacttcgtcgaggggcgctacgacgtcctc
tgcgccaccgccatcatcgagagcggcctcgacatcccccgcgccaacaccatcctcatc
gaccgcgccgacatgttcggcctctcgcagctctaccagctgcgcggccgcgtcggccgc
tccaaggagcgggcctactgctacctcatcgtcccgcccccgaacgccatgaccgacgag
gcccgcgcccgcatcgaggccctcgagcgccacaccgagctcggctccggcttccagatc
gcctcgctcgacctggagctgcgcggcgccggcgacctcctcggcgccgagcagagcggc
accgtcgcccaggtcggcttcgagctcttctgccagatgctcgacgaggccgtccacgag
ctccgcggcgatcccgtggtccacgacgtcgacaccgagctctccttcgacgccgatgcg
ctcctgccagaggagtacatctccgacgtaggcgtacgcctctccctctacaagcgcttc
gccagcgccggctcggccgaggacgtgcaggacctcgcggtcgagatggaagaccgcttc
ggcccgccgccgctcgaggcgcgccggttcgtgcacctcatgcggctcaagaccgagctg
cgccggctgaaggcgctcgcgtgcgaggcgagcgccaagggggtcacgctgcacctgcgc
gaggacaccccgctcgaccacgccaaggtgctccggctggtccagccgaagggctcgccc
taccggatctcgcccgacatgcggctctcccgtcgcccccgggacggcgaggtcttcacg
agcgggctggaggcgaccgacaagctcctcagcgagctcgccaactgcctcaaggacggc
gcctga
DBGET
integrated database retrieval system
