Sorangium cellulosum So0157-2: SCE1572_17605
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Entry
SCE1572_17605 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCE1572_17605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scu03019
]
SCE1572_17605
03400 DNA repair and recombination proteins [BR:
scu03400
]
SCE1572_17605
Enzymes [BR:
scu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCE1572_17605
Messenger RNA biogenesis [BR:
scu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCE1572_17605
DNA repair and recombination proteins [BR:
scu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCE1572_17605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGP36151
UniProt:
S4XUX7
LinkDB
All DBs
Position
complement(4979236..4981353)
Genome browser
AA seq
705 aa
AA seq
DB search
MIFAEPPSPIVTERLAPSPLRPPEGPPPSIDAVLADRFGIASFRPWQREAIDALLGGAGR
VLVVAPTGGGKSLCYQLPAVALPGTTLVLSPLISLMEDQVRALEARGIPATFVASSLPRE
ENGRRLAALRRGEYKLVYAAPERLAFDGFLEALAESRLSLVAVDEAHCIVQWGHDFRPDY
LRIGAALARLRPPRVLACTATATPDARDEIIRRLGWPRSSPGDDDGVAGEPGPEGPPPKV
ILRGFARPNLHLQVSAVDGPREAGRLTARALLDALGDPGRPRGAGIVYAATRKGAERLAE
ALRDAGWNAEAYHAGLAPESRARLSAGFADRSLSVVVATNAFGMGIDRPDVRLVVHAQPP
SSIEAYYQEVGRAGRDGDPARGLLLFAPADIALRRRLCQLGEGGAEASADDAARAWGLFR
ELLRYIDAATCRHDFILRYFGDEAESLGGCGHCDVCLEVDALEESDPAALARDNDLVRRA
LAGVARAKGGAGMQAIASMLIGESNERVRRMGLDRLSTFGVLEGKRHDEAMSILRVLLAN
AWIDLTTGEFPVPLVTPSGWRVMRGEVPARVRLPLPAARRKPPRRPASPSPAARPAPAAR
ASSAAAHDRAPAAPVAASPAQADPGVELEEGDVPLFEALRAHRAALAKEKSLPAYVIAHD
RTLREIARIRPASLDDLALARGMGQAKISSYGEGILRVVREFSGA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcgctgagcccccctcgccgatcgtgaccgagcgcctcgccccctccccgctg
cgcccccccgagggcccgcccccgtcgatcgacgccgtgctcgcggatcggttcggcatc
gcgtcgttccggccgtggcagcgcgaggcgatcgacgccctgctcgggggcgcgggccgc
gtcctcgtcgtcgcgccgaccggcggcggcaagtcgctctgctaccagctcccggccgtc
gccttgccgggcacgacgctcgtcctgagcccgctcatctccctgatggaagatcaggtg
cgcgcgctcgaggcgcgcggcatccccgcgacgttcgtcgcctccagcctcccgcgcgag
gagaacggccgccgcctcgccgccctgcgccgcggcgagtacaagctcgtctacgccgcg
cccgagcgcctcgcgttcgacggcttcctcgaggcgctcgccgagagccggctctcgctc
gtcgccgtcgacgaggcgcactgcatcgtccagtgggggcacgacttccggcccgactac
ctgcgcatcggcgccgcgctcgcgcggctccgcccgccccgggtcctcgcctgcaccgcg
acggcgacccccgacgcgcgcgacgagatcatccggcgcctcggctggccgcggagctcg
cccggcgacgacgacggcgtcgcgggcgagcccgggccggaagggccgccgcccaaggtc
atcctgcgcggcttcgcccggcccaacctccacctgcaggtctccgcggtggacggcccg
cgcgaggccgggcgcctcacggcgcgcgcgctcctcgacgccctcggcgaccccgggcgg
ccccgcggcgcgggcatcgtgtacgccgccacccgcaagggggcggagcgcctggccgag
gcgctccgcgacgccggctggaacgccgaggcgtaccacgccggcctcgcccccgagtcg
cgcgcgcgcctgtcggccggcttcgccgatcgcagcctctccgtggtggtcgccacgaac
gccttcggcatgggcatcgaccggcccgacgtgcgcctcgtcgtgcacgcccagccgccg
tcgtcgatcgaggcctactaccaggaggtcggccgcgccggccgcgacggcgacccggcc
cgcggcctgctcctgttcgcgcccgcggacatcgcgctgcgccgccggctctgccagctc
ggcgaggggggcgccgaggccagcgccgacgacgccgcgcgcgcgtgggggctcttccgc
gagctcctccgctacatcgacgccgcgacgtgccggcacgacttcatcctccgctacttc
ggcgacgaggccgagtcgctcggcgggtgcggccactgcgacgtctgcctcgaggtcgac
gccctggaggagagcgacccggccgcgctcgcccgcgacaacgacctcgtgcgccgcgcg
ctcgccggcgtcgcgcgggcgaagggcggcgccgggatgcaggcgatcgcgtcgatgctc
atcggcgagtcgaacgagcgcgtccgccgcatggggctcgaccggctctccaccttcggc
gtcctcgaggggaagcgccacgacgaggccatgtcgatcctgcgggtcctgctggccaac
gcctggatcgatctcaccaccggcgagttccccgtcccgctcgtcacgccctcgggctgg
cgcgtgatgcgcggcgaggtgcccgcccgggtgcgcctcccgctccccgccgcgcgccgg
aagccgccgcgccgaccggcgtccccctcgcccgccgcgcgccccgcgccggccgcgcgc
gcgtcctccgcggcggcccacgaccgcgcgccggccgcgcccgtcgccgcctcgcccgcg
caggcggaccccggggtcgagctcgaggagggggacgtcccgctgttcgaggcgctgcgc
gcccacagggccgcgctcgccaaggagaaatcgctgcccgcctacgtcatcgcgcacgac
cggacgctccgggagatcgcgcggatccggcccgcgtcgctcgacgatctcgcgctcgcg
cgcggcatggggcaggcgaagatctcgagctacggcgagggcatcctccgcgtggtgcgg
gagttctcgggcgcctag
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