Sorangium cellulosum So0157-2: SCE1572_22220
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Entry
SCE1572_22220 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scu
Sorangium cellulosum So0157-2
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scu03016
]
SCE1572_22220
Enzymes [BR:
scu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SCE1572_22220
Transfer RNA biogenesis [BR:
scu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SCE1572_22220
Prokaryotic type
tRNA splicing ligases
SCE1572_22220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGP36967
UniProt:
S4XUV4
LinkDB
All DBs
Position
6283836..6284543
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AA seq
235 aa
AA seq
DB search
MSARIAAWLPDGAGAALDASLARLARTEDVAHVAVMPDAHVADDVCVGTVTATTRRLLPA
AVGGDIGCGMVALRLRADADLLADRDRAARLLSGLCRRVPHVLHPAAGTPPLPDDLAEAR
LGAPRLEAMKRREGRMELGTLGRGNHFLEVQRDEEGALWLLLHSGSRAMGPAIREHHEAL
AARDPSGVRFLEADSEAGRAYLADAAWAASYARASRARMAAEAAGLFAPLTDDRA
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgcgcatcgccgcgtggctcccggacggcgcgggcgcggcgctcgacgcctcg
ctcgcgcggctcgcgcgcaccgaggacgtcgcgcacgtcgcggtgatgcccgacgcgcac
gtggccgacgacgtgtgcgtcggcacggtgaccgccacgacccgccgcctcctgccggcg
gcggtcggcggcgacatcgggtgcggcatggtcgcgctgcggctccgcgcggacgccgat
ctgctcgcggatcgcgaccgcgcggcgcggctcctctcggggctctgccgccgcgtcccg
cacgtcctgcacccggccgccggcaccccgccgctgccggacgacctcgccgaggcgcgg
ctcggcgcgccgcggctcgaggcgatgaagcgccgcgagggtcgcatggagctcggcacg
ctcggccggggaaaccatttcctggaggtgcagcgcgacgaggagggcgcgctgtggctg
ctcctgcacagcggctcgcgcgccatggggccggcgatccgggagcaccacgaggcgctc
gcggcgcgcgatccctcgggggtccgcttcctcgaggccgacagcgaggcagggcgcgcg
tacctcgccgacgcggcgtgggccgcgagctacgcgcgtgcgagccgcgcccggatggcg
gccgaggccgcggggctcttcgcgccgctcacggacgatcgagcgtga
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