Sorangium cellulosum So0157-2: SCE1572_43160
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Entry
SCE1572_43160 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCE1572_43160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scu03019
]
SCE1572_43160
03016 Transfer RNA biogenesis [BR:
scu03016
]
SCE1572_43160
Enzymes [BR:
scu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SCE1572_43160
Messenger RNA biogenesis [BR:
scu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCE1572_43160
Transfer RNA biogenesis [BR:
scu03016
]
Prokaryotic type
tRNA degradation factors
SCE1572_43160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AGP40696
UniProt:
S4Y8K8
LinkDB
All DBs
Position
complement(12141015..12142952)
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AA seq
645 aa
AA seq
DB search
MHALVRGRISVNPRGFGFLNIEASPEKGGAPGRPPLAPATAFITPPDLNPFLDGDVVDAV
VVEAEPGRYGASQLALVHRDRAELFGTVVTHAKRPHLRVDRLVSNTDWPFKPGAADDLAE
GTAVVAVIEGAAVVPARVVAPGADLGIERCLARNGVRAVFPGEVVEASRAAAAAVSIERE
LARGRRDLRELTTVTIDAPVTTDIDDALAVLPAGPDGALRVFVSIADVDAFVQEGSPLDL
EARARGTSVYLAGRVIPMLPESISSEAASLLPGVDRLAITAELRVDPEGGVTAVDLHESV
IRSHARLSYDAVEEFLTTGRSAGIPEAAWPVVRWLRTAAARLSTVRAARGGVELDRDEAY
VTLDAETREPTGVSPRSDTGAHRLVERLMVAANEAVASWLVARGLPCVFRVHDEPTEERV
RALERFAHNFGVEAGFGPRLSPLGLAAFEAQYRGSELAPAIRTVLGKALGPARYTAAGGL
HFGLGAPLYLHFTSPIRRYADLAVHRVIKGYLQGRRDQRVDAEALASLAHHLNARARSAG
KAETERHRMLVARLFASRIGEEIEGNIVSIKPFGLVVQMVESGATGTIALEALPEGPYRI
DAAAQALVGASRRYGVGEPIRAAIASTNEELGRVDLVPAGARGAA
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcactggttcgtggacgcatctcggtcaacccgcgcggcttcgggttcctgaac
atcgaggcctctccggagaaaggaggggcgccgggcaggccgcccctggccccggcgacc
gccttcatcacgccgcccgatctgaacccgttcctcgacggcgacgtcgtggacgcggtg
gtcgtcgaggcggagccgggccgctacggcgcgtcgcagctcgccctcgtccatcgcgat
cgcgccgagctcttcgggacggtcgtgacgcacgcgaagcggccgcacctccgggtcgat
cgcctcgtctccaacacggactggccgttcaagccgggcgccgccgacgacctcgccgag
ggcaccgcggtggtcgccgtcatcgagggcgcggcggtcgtcccggcgcgggtcgtcgcg
ccgggcgccgatctcggcatcgagcgctgcctcgcccgcaacggcgtgcgcgccgtgttc
ccgggcgaggtcgtcgaggcgtcgcgcgcggcggcggcggcggtgtcgatcgagcgcgag
ctcgcgcgcggccgccgcgacctgcgcgagctcaccacggtcaccatcgacgcgcccgtc
accaccgacatcgacgacgcgctcgccgtgctgccggccggtcccgacggcgcgctccgc
gtgttcgtgtcgatcgccgacgtggacgcgttcgtccaggagggctcgccgctcgatctc
gaggcccgcgcccgcggcacgagcgtctacctcgccggccgcgtcatcccgatgctcccc
gagtcgatctccagcgaggcggcgagcctgctcccgggggtcgatcggctcgcgatcacg
gccgagctgcgcgtcgatcccgagggcggcgtcaccgcggtcgatctccacgagagcgtg
atccgctcgcacgcccgcctctcgtacgacgccgtcgaggagttcctcacgaccggccgg
tccgccggcatccccgaggcggcgtggccggtcgtgcgctggctccgcaccgcggccgcg
cgcctgtcgacggtccgcgccgcgcgcggcggcgtcgagctcgaccgcgacgaggcctac
gtgacgctggacgccgagacgcgcgagccgaccggcgtctcgccgcgctcggacaccggc
gcgcaccgcctcgtcgagcggctgatggtggcggcgaacgaggccgtggccagctggctc
gtggcgcgcgggctcccgtgcgtctttcgcgtccacgacgagcccaccgaggagcgcgtc
cgggcgctcgagcgcttcgcgcacaacttcggcgtcgaggccgggttcggcccgcgcctg
agccccctcggcctcgcggcgttcgaggcgcagtaccgcggctcggagctcgcgcccgcc
atccgcaccgtgctcggcaaggcgctcggcccggcccgctacacggccgccgggggcctg
catttcggcctcggcgccccgctgtacctgcacttcacgtccccgatccgccgctatgcc
gatctcgccgtgcaccgcgtcatcaagggctacctccagggccgccgcgatcagcgcgtg
gacgccgaggcgctggcgtcgctcgcccaccacctgaacgcgcgggcgcgcagcgccggc
aaggccgagacggagcggcaccgcatgctcgtcgcgcgcctgttcgcctcccggatcggc
gaggagatcgagggcaacatcgtgtccatcaagccgttcggcctcgtcgtccagatggtc
gagtccggcgcgacgggcacgatcgcgctggaggcgctgccggaggggccgtaccggatc
gacgccgccgcccaggcgctcgtcggcgcgagccgccgctacggcgtcggcgagccgatc
cgcgccgccatcgcgtcgacgaacgaggagctcggccgcgtcgacctcgtccccgcgggc
gcccgcggcgccgcgtga
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