Streptomyces cyaneogriseus: TU94_24315
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Entry
TU94_24315 CDS
T03687
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scw
Streptomyces cyaneogriseus
Pathway
scw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TU94_24315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scw03019
]
TU94_24315
Messenger RNA biogenesis [BR:
scw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TU94_24315
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AJP04132
UniProt:
A0A0C5FVR0
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Position
5776802..5778487
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLQVAEGNRERVGPFDCEFIAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLTDSTNAEVPGFTPHERDISGVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAYEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKALDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGAMTGVPHD
RIVIAEDGVAVDLIEGKARISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VIDASTGKITGGPHIQARGSGIEDSAFGDVIPRITDVLERSAQDGVVEPHQMQQLVRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactgggcccgcccccgccgcttcccgaaggcggtctgcgg
gtcaccccgctcggcggcctcggcgaaatcggccggaacatgacggtgttcgagtacggc
ggccgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagccgggaatc
gacctgatcctgccggacttctcgtccatccgggaccgcctcgacgacatcgagggcatc
gtcctcacccatggccacgaggaccacatcggcggcgtcccctacctcctgcgcgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccgtacaccctgcaggtggcggaaggaaaccgcgagcgcgtcggc
cccttcgactgcgagttcatcgcggtcaaccactccatccccgacgcactggccgtggcc
atccgcacccccgcgggcatggtggtccacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctccacgcgttcgcgcggctgagcgaggagggcatcgac
cttctcctcaccgactccacgaacgccgaggtccccggcttcaccccgcacgagcgggac
atctccggcgtcctgcgccaagtgttcgccggcgcccgcaagcggatcatcgtggccagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcctacgagtacggccgc
cgcgtcgccttcgtcggccgctccatggtccggaacatgggcatcgcccgtgacctgggc
tatctgaaggtccccccgggcctggtcgtggatgtcaaggccctcgacgacctcccggac
cacgaggtggtcctggtctgcacggggtcccagggcgagccgatggcggccctgtcccgc
atggccaaccgggaccaccagatccgcatcgtcgagggcgacacggtgatcctggcgtcc
tcgctcatccccggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgtccgaggaacctgatgccggtccacggc
gaatggcgccacctgcgcgccaacgcggaactgggcgccatgaccggcgttccgcacgac
cgcatcgtcatcgccgaggacggcgtggccgtcgacctgatcgagggcaaggcgagaatc
tccggcaaggtgcaggcgggatacgtgtacgtcgacggcctttcggtcggcgacgtgggc
gagccggccctcaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtcatcgacgcctccaccggcaagatcacgggtggcccgcacatccaggcccgcggctcg
ggcatcgaggactccgccttcggcgacgtgatcccccggatcacggacgtcctggagcgc
tccgcccaggacggcgtcgtcgagccgcaccagatgcagcagttggtccgccggaccctg
ggcaagtgggtctccgacacctaccggcgcaggccgatgatcctccctgtcgtcgtggag
gtctga
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