Streptomyces sp. CdTB01: AS200_13315
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Entry
AS200_13315 CDS
T04240
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scx
Streptomyces sp. CdTB01
Pathway
scx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS200_13315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scx03019
]
AS200_13315
Messenger RNA biogenesis [BR:
scx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AS200_13315
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ALV32920
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Position
complement(3052125..3053810)
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AA seq
561 aa
AA seq
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MSHPHPELGRPPALPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERVGPFDCEFIAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFTPHERDISNVLRQVFASARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVDGDTVILASSLIPGNENAVYRVINGLTRW
GANVIHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVEGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VVDSSTGKITGGPHIQARGSGIEDSAFSDVIPKIAEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggccgacccccggcgcttcccgagggcggcctacgg
gtcaccccgctcggcggtctcggcgagatcggccgaaacatgacggtcttcgagtacggc
ggccgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatcagggaccgcctcgacgacatcgagggcatc
gtcctgacgcacggccacgaggaccacatcggcggcgtccccttcctcctgcgggagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccgtacaccctggaggtggcggaggggaaccgcgaacgcgtcggc
cccttcgactgcgagttcatcgcggtcaaccactccatcccggacgcgctcgcggtcgcc
atccgcaccccggccggcatggtcgtccacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcacggacctgcacgcgttcgcccgcctgagcgaggagggcatcgac
ctcctcctgtcggactccacgaacgccgaggtcccgggcttcaccccgcacgagcgggac
atctccaacgtcctgcgccaggtcttcgcgagcgcccgcaagcggatcatcgtggcgagc
ttcgccagccatgtccaccgcatccagcagattctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgacctcggc
tacctgaaggtcccgccgggcctggtggtcgacgtcaagacgctcgacgacctcccggac
cacgaggtggtcctggtctgcacgggctcgcagggcgaaccgatggcggcgctgtccagg
atggccaaccgcgaccaccagatccggatcgtcgacggggacacggtgatcctcgcctcc
tcgctgatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcatccacaagggcaacgccaaggtgcacgtctcgggccacgcgtccgcc
ggcgagctcctgtacttctacaacatctgccgcccgaagaacctgatgccggtgcacggc
gaatggcgccatctgcgggccaacgccgagctgggcgctctcaccggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtggtcgtcgacctcgtcgagggcaaggccaagatc
tcgggcaaggtccaggcggggtacgtgtacgtcgacggcctgtcggtcggcgacgtgggc
gagccggccctgaaggaccggaagatcctgggcgacgagggcatcatctcggtcttcgtc
gtcgtggactcctccaccggcaagatcacgggcggtccgcacatccaggctcggggctcg
ggcatcgaggactccgcgttcagcgacgtcatcccgaagatcgccgaggtcctcgaacgc
tcggcccaggacggcgtcgtggagccgcaccagctgcagcaactcatccgccggaccctc
ggcaagtgggtctccgacacgtaccgccgcaggccgatgatcctgccggtcgtggtggag
gtctga
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