Streptomyces sp. CdTB01: AS200_13355
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Entry
AS200_13355 CDS
T04240
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
scx
Streptomyces sp. CdTB01
Pathway
scx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS200_13355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scx03019
]
AS200_13355
03016 Transfer RNA biogenesis [BR:
scx03016
]
AS200_13355
Enzymes [BR:
scx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AS200_13355
Messenger RNA biogenesis [BR:
scx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AS200_13355
Transfer RNA biogenesis [BR:
scx03016
]
Prokaryotic type
tRNA degradation factors
AS200_13355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
DUF2017
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ALV32928
UniProt:
A0A0U3NTE5
LinkDB
All DBs
Position
complement(3059807..3062023)
Genome browser
AA seq
738 aa
AA seq
DB search
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQV
VCTIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDA
VFDMVVAGRTLEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC
KAQSDLAAKAAKPTGEFPVFLDYQDDVLEALTAAVKPELASALTIAGKQEREAELDRVKA
LAAEKLLPEFEGREKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSAVFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSP
KRREIGHGALAERALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIEGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAQVGSQAEAARATINSIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL
VPVIEGEEDAETKDDTDK
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcatcgacaacggctccttcggcacccgc
accatccgcttcgagacgggccgcctggccaagcaggccgccggctccgccgtggcctac
ctggacgacgacaccatggtgctgtcggccaccaccgcctccaagaaccccaaggaccag
ctcgacttcttccccctcacggtggacgtcgaggagcggatgtacgccgccggcaagatc
cccggcagcttcttccgccgtgagggccgtccctccgaggacgccatcctcacctgccgt
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtctgcacgatcatggccctcaaccccgaccacctgtacgacgtcgtggcgatcaacgcc
gcctccgcgtccactcagctggccggtctgcccttctccggcccgatcggcggcgtccgc
gtcgcgctgatcaacggccagtgggtggccttcccgacgcacaccgagctcgaggacgcc
gtcttcgacatggtcgtcgcgggccgcaccctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccatccagctggtcaagggcggtgccgaggccccc
accgaggaggtcgtcgccgccggtctcgaggccgcgaagcccttcatcaaggtgctgtgc
aaggcgcagtccgacctcgccgccaaggccgccaagccgaccggcgagttcccggtcttc
ctggactaccaggacgacgtcctcgaggccctcaccgccgcggtcaagccggagctcgcc
tccgcgctgaccatcgccggcaagcaggagcgcgaggccgagctggaccgcgtcaaggcg
ctcgccgccgagaagctcctgccggagttcgagggccgcgagaaggagatctccgccgcg
taccgctcgctgaccaagaccctggtccgtgagcgcgtcatcaaggagaagaagcgcatc
gacggccgcggtgtcaccgacattcgcaccctggccgccgaggtcgaggccatcccgcgc
gtgcacggctccgcggtgttcgagcgtggtgagacccagatcctgggcgtcaccaccctg
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccaccggcgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgccctcgccgagcgcgccctcgtcccggtcctgccg
acgcgcgaggagttcccctacgcgatccgccaggtctccgaggcgctgagctccaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggcccccgtcgccggtatcgccatgggcctgatctctcaggagatcgagggcgag
acgcactacgtcaccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaaggagttcgtgaccgccctccagctcgacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctgaagcaggcccgtgacgcccgcctccac
atcctcgacgtgatgatggaagcgatcgacacgccggacgagatgtcccccaacgccccg
cggatcatcaccgtgaagatccccgtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
acgatctacatcggtgcccaggtcggctcgcaggccgaggcggcccgcgcgacgatcaac
tcgatcgccaacccgaccatgccggaggtcggcgagcgctacctgggcacggtcgtgaag
acgacgacgttcggcgcgttcgtctcgctgctgcccggcaaggacggtctgctgcacatc
tcgcagatccgcaagctggccggcggcaagcgcgtcgagaacgtcgaggacgtgctcggc
gtgggcgccaaggtccaggtcgagatcgccgagatcgactcccgcggcaagctctcgctc
gtccccgtgatcgagggcgaagaggacgcagagacgaaggacgacaccgacaagtga
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