Streptomyces sp. CdTB01: AS200_21280
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Entry
AS200_21280 CDS
T04240
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scx
Streptomyces sp. CdTB01
Brite
KEGG Orthology (KO) [BR:
scx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scx03016
]
AS200_21280
Enzymes [BR:
scx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AS200_21280
Transfer RNA biogenesis [BR:
scx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AS200_21280
Prokaryotic type
tRNA splicing ligases
AS200_21280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALV34303
LinkDB
All DBs
Position
complement(4769562..4770755)
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AA seq
397 aa
AA seq
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MSYVEIPGAKVPIRMWTDPASVEDVALQQLRNVATLPWIKGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVDPS
RMHGFATAGWDDFWDRFGGVAEAVKFRSERATLQMGTLGGGNHYIELSFDSDGRVWLTLH
SGSRNIGKELAEHHIGVAQKLSHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TIMMALLKDVVRREFKKAKPTFEPEISCHHNYVAEERYEGMELLVTRKGAIRAGAGEYGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTVRDLEEQTRGVECRKDSG
VLDEIPGAYKNIDQVMEQQRDLVEVVAKLKQFVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagataccgggtgccaaggttcccatccggatgtggaccgacccggcg
tcggtcgaggacgtggccctgcagcagctgcgcaacgtcgcgaccctgccgtggatcaag
ggcctggcggtgatgccggacgtccacttcggtaagggcgcgacggtcggctccgtcatc
gcgatgcggggggcggtgtgtcccgcggcggtgggggtggacatcgggtgcgggatgtcg
gcggtgaggacgtcgctgacggcgaacgaccttcccggcgacctgtcgcggctgcgctcg
aagatcgagcaggccattccggtgggccgcggcatgcacgacgacccggtcgacccctcc
cgcatgcacggcttcgccaccgccggctgggacgacttctgggaccgcttcgggggtgtg
gcggaggcggtgaagttccggtcggagcgggcgacattgcagatggggacgctcgggggc
ggcaatcactatatcgaactttcgttcgattctgacgggcgtgtatggctcacgctgcac
tccggttcgcgcaacatcggcaaggaactcgccgagcaccacatcggcgtggcccagaag
ctctcccacaatcagggcctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaagtacaaccgc
acgatcatgatggcgcttctgaaggacgtggtccgcagggagttcaagaaggcgaagccg
accttcgagccggagatctcctgccaccacaactacgtcgccgaggagcggtatgagggt
atggagttgctggtgacccgcaagggtgcgatccgggcgggcgccggtgagtacggcatc
atcccagggtcgatggggaccagttcctacatcgtgaagggccttggaaacgagaaggcc
ttcaactctgcttcgcacggcgccggtcggcgcatgagccgcaatgccgcgaagcggcga
ttcacggtacgggacctggaagagcagacccggggagtggagtgccgtaaggactccggt
gtgctggacgagattccaggggcttacaaaaacatcgatcaggtcatggagcagcagcgc
gatctggtcgaggtcgtggcgaagctgaagcagttcgtctgtgtcaagggctga
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