Streptomyces sp. CdTB01: AS200_24395
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Entry
AS200_24395 CDS
T04240
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
scx
Streptomyces sp. CdTB01
Brite
KEGG Orthology (KO) [BR:
scx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scx03019
]
AS200_24395
Enzymes [BR:
scx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AS200_24395
Messenger RNA biogenesis [BR:
scx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AS200_24395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
SLFN-g3_helicase
T2SSE
ResIII
NACHT
AAA_16
AAA_30
NTPase_1
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
ALV34838
UniProt:
A0A0U3PLY2
LinkDB
All DBs
Position
complement(5451900..5455853)
Genome browser
AA seq
1317 aa
AA seq
DB search
MSTHPAPDAPALGTLAPRLTELSLRDAHRLGRRLEGARKIRKAEARAAVLAEIEAEVARA
EERIGERRVRVPAVSYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICLEL
GRGVRGMIGHTQPRRIAARTVAERVAEEMDTPLGEAVGWKVRFTDQVNQDSTFIKLMTDG
ILLAEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPER
FSRHFGDAPIVEVSGRTYPVEVRYRPLLEEDSDDADRDQITAITDAVEELMGEGKGDILV
FLSGEREIRDTADALTKKQYRFTEILPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSL
TVPGIKYVIDPGFARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSED
DFLARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGAL
DAAEKDPRKRLTQTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPA
DKQAQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQ
DIYSQLRTVAKQMGIHLNEDDAPGDRVHVSLLAGLLSHIGMKDVKDGAKNEYLGARNAKF
AIFPGSALFKKPPRFVMSAELVETSRLWARVNAKIEPEWVEPLAGHLLKRTYSEPHWEKD
QAAVMAYEKVTLYGVPIIAQRKVNYGRIDPEASRELFIRNALVEGDWRTHHKFFADNRKL
LSEVEELEHRARRRDIVVDDETLFDFYDARVPEHVVSGAHFDSWWKRKRHEQPEYLDFER
EMLIRESAEAVTKADYPDSWRQGGLKFRVTYQFEPGADADGVTVHIPLQVLNQVKDEGFD
WQIPGLREELVTELIRSLPKPIRRHYVPAPNFAKRFLDTAVPLQEPLTTTMARELKRMVG
VPFTAEDFDWSKVPEHLRVTFRIVDERRRKLAEDKDLETLRLRLRPKARQALSQAAAATA
ERTGGESLERSGLTDWTIGTLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQAE
AMWKGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHGSIQALFDDCAMAAADRLIGD
FGGPAWDEESYRKLYERVRAEIVDTTVRTVGQVQQVLAAWQACERRLKAVRSPVLLPNLQ
DVRAQLDALVKPGFVTEAGLRRLPDLMRYLVAADRRLQQMPTNVQRDTTRMEKVHEMRDE
YAWLLEQLPQGRPVPSSVKDIRWMLEELRVSYFAHALGTAYPVSDKRIMKAIDAAAP
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcaccctgcccccgatgccccggccctcggcaccctcgccccccgcctgacc
gagctgtccctgcgcgacgcgcaccggctcgggcgcaggctcgaaggcgcgcgcaagatc
cgcaaggcggaggcccgtgccgccgtgctcgccgagatcgaggcggaggtcgcccgcgcc
gaggagcgcatcggcgagcggcgcgtccgcgtccccgcggtcagctaccccgagcagctg
ccggtcagccagaagaaggacgagatcgccgcggccatccgcgaccaccaggtcgtcatc
gtggccggtgagaccgggtccggcaagacgacccagatcccgaagatctgcctcgaactg
gggcgcggcgtacgcggcatgatcggccacacgcagccccgccggatcgccgcgcgcacg
gtcgcggagcgcgtggcggaggagatggacacccccctcggcgaggccgtcggctggaag
gtccggttcaccgaccaggtcaaccaggactccacgttcatcaagctgatgacggacggc
atcctgctcgccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatc
gacgaggcccacgagcggtccctcaacatcgacttcctgctcgggtacctcgcccagctg
ctgcccaagcggccggatctgaaggtcgtcatcacctcggcgaccatcgatcccgagcgt
ttctcccggcacttcggcgacgccccgatcgtcgaggtcagcgggcggacgtatccggtg
gaggtgcgctaccgccccctcctggaggaggactccgacgacgccgaccgggaccagatc
acggcgatcacggacgccgtcgaggagctgatgggcgaggggaagggcgacatcctggtc
ttcctctccggggagcgggagatccgggacacggcggacgcgctcacgaagaagcagtac
cgcttcacggagatcctgccgctctacgcccgcctctcgcacgccgagcagcaccgcgtc
ttccagcagcacaccgggcgcaggatcgttctggcgacgaacgtcgccgagacgtccctg
acggtccccggcatcaagtacgtcatcgacccgggcttcgcgaggatcagccgctacagc
caccgcaccaaggtgcagcggctgcccatcgagccgatcagccaggccagcgccaaccag
cgcaagggccgctgcggccgtaccagcgacggcatctgcatccggctctactccgaggac
gacttcctcgcccgcccggagttcacggacgccgagatcctccgcacgaacctggcgtcc
gtcatcctgcagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgac
ccgccggaccaccgcaacatccgtgacggcgtgcagctgctgcaggagctgggcgcgctc
gacgcggccgagaaggacccgcgcaagcggctcacgcagaccggccgcaagctcgcccag
ctgcccgtcgacccccggctggcccggatggtcctggaggccgacaagaacggctgcgtc
cgcgaggtcatggtcatagccgcggcgctgtccatccaggacccgcgcgagcggcccgcg
gacaaacaggcgcaggccgaccagcagcacgcccgcttcaaggacgagaccagcgacttc
ctggcctacctgaacctctggcggtacgtccgggagcagcagaaggagcggggttcgtcg
tccttccgccggatgtgcaagcaggagtacctcaacttcctgcgcatccgcgagtggcag
gacatctactcccaactgcgcaccgtcgccaagcagatgggcatccacctcaacgaggac
gatgcccccggcgaccgcgtgcacgtctccctgctggccggtctgctctcgcacatcggc
atgaaggacgtcaaggacggcgccaagaacgagtacctgggcgcccgcaacgccaagttc
gcgatcttccccggctcggcgctgttcaagaagccgccgcggttcgtgatgtcggcggag
ctggtggagacctcgcgcctgtgggcccgcgtcaacgcgaagatcgagcctgagtgggtc
gaacccctcgccggccacctcctcaagcgcacctacagcgagccgcactgggagaaggac
caggcggcggtgatggcgtacgagaaggtcacgctctacggcgtcccgatcatcgcccag
cgcaaggtgaactacggccggatcgaccccgaggcctcccgcgagctgttcatccgcaac
gccctcgtcgagggcgactggcgcacccaccacaagttcttcgccgacaaccgcaagctg
ctcagcgaggtcgaggagctcgaacaccgcgcccggcgccgggacatcgtcgtcgacgac
gagacgctcttcgacttctacgacgcccgggtgcccgagcacgtggtctccggagcccac
ttcgattcctggtggaagcgcaagcggcacgagcagccggagtacctggacttcgagcgc
gagatgctcatccgggagtcggcggaggcggtcaccaaggccgactacccggactcctgg
cggcagggcggcctgaagttccgggtgacgtaccagttcgagccgggcgcggacgccgac
ggtgtgacggtccacatcccgctgcaggtcctcaaccaggtcaaggacgagggcttcgac
tggcagatcccgggtctgcgggaggagttggtgacggagctgatccgctccctgcccaag
ccgatccgccgccactacgttccggccccgaacttcgcgaagcggttcctggacacggcc
gtaccgctgcaggagccgctgacgacgaccatggcgcgcgagctgaagcgcatggtcggt
gtgccgttcaccgccgaggacttcgactggtcgaaggtgccggagcatctgcgcgtcacc
ttccggatcgtggacgaacggcggcggaagctggccgaggacaaggacctggagacgctg
cggctgcgactgcggcccaaggcccgccaggccctgtcccaggcggccgcggcgaccgcg
gagcgcaccggcggggagtccctggaacgctccggcctgaccgactggacgatcggaacc
ctcacccgcgtcttcgagacccgccgcgccggccagccggtgaaggcgtacccggcgctc
gtggacgacggcgacacggtctccgtacgcctcttcgacacggaggcggagcaggcggag
gcgatgtggaagggcacccgccggctcatcctgcgcaacatcccggtcaatccggcgaag
ttcgcgtccgagaagctgacgaacgcccagaagctcgccctctccgccaatccgcacggc
tcgatccaggcgctcttcgacgactgcgcgatggccgcggccgacaggctgatcggggac
ttcggggggccggcgtgggacgaggagtcgtaccggaagctgtacgagagggtgcgcgcg
gagatcgtggacacgacggtccgcacggtgggtcaggtgcagcaggtgctggccgcctgg
caggcctgtgagcgccgtctgaaggccgtccgcagtcccgtcctgctgcccaacctccag
gacgtacgggcccagctggacgccctcgtgaagccgggcttcgtcaccgaggcaggtctg
cgccgccttcccgacctgatgcggtacctggtcgcagcggaccgccgcctccagcagatg
ccgaccaacgtccagcgcgacaccacgcgcatggagaaggtccacgagatgcgggacgag
tacgcctggctcctggaacagctcccccagggccgcccggtgccgtcctcggtcaaggac
atccgctggatgctggaggagctccgggtcagctacttcgcgcacgcgctgggcacggcg
taccccgtctcggacaagcggatcatgaaggcgatcgacgcggccgcaccgtga
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