Streptomyces sp. CdTB01: AS200_40545
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Entry
AS200_40545 CDS
T04240
Name
(GenBank) RNA polymerase subunit sigma
KO
K03090
RNA polymerase sigma-B factor
Organism
scx
Streptomyces sp. CdTB01
Brite
KEGG Orthology (KO) [BR:
scx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scx03021
]
AS200_40545
Transcription machinery [BR:
scx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AS200_40545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
MarR_2
HTH_Crp_2
DUF7343
SUZ
KORA
HTH_3
GerE
Motif
Other DBs
NCBI-ProteinID:
ALV37672
UniProt:
A0A0U3NY56
LinkDB
All DBs
Position
9084546..9085337
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AA seq
263 aa
AA seq
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MRRPQTAEPGPADAHDLSEPLFERLRSLEQRTAEYAYVRNTLVELNMWIVRHAARRFPAR
REMSDDVLQAGTIGLIKAIDRFDPTRGFGFEAYAVPTVVGEIKRFFRDTTWAVHVPRRLK
ECRGVLREAVIAFEQSEGRSPRVSELVERTGLTQEEVVEGLQAADGHEAVSLDAPFGPDE
DGAGIADRLGAEDPALGRTDDLVTLAPLLAALPERERRILTMRFLHDMTQSQIGAELGIS
QMHVSRLLGRTLAGLRNRLHGAV
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
gtgcgccgcccgcagaccgcagaaccgggtccggcagacgcccacgacctgtccgagccg
ctgttcgagcgcctgcgctccctggaacagcggaccgccgagtacgcctacgtccgcaac
acgctcgtggagctgaacatgtggatcgtgcggcacgcggcgcggcgcttcccggcgcgc
cgggagatgagcgacgacgttctgcaggcgggcaccatcgggctgatcaaggcgatcgac
cggttcgacccgacgcgcggcttcggcttcgaggcgtatgccgtgccgacggtcgtcggc
gagatcaagcggttcttccgggacaccacctgggccgtccacgtcccccggaggctgaag
gagtgccgtggcgtgctgcgcgaggcggtcatcgccttcgagcagtccgaggggcgctcg
ccccgcgtcagcgaactcgtcgagcgcaccgggctgacacaggaggaggtggtcgagggg
ctccaggcggccgacgggcacgaggccgtgtccctcgacgcacccttcgggcccgacgag
gacggcgccggcatcgccgaccggctcggcgccgaggatcccgccctcggccggacggac
gacctggtcaccctcgcaccgctgctcgccgccctgccggagcgcgagcgccggatactg
accatgcggttcctgcacgacatgacgcagagccagataggagccgagctgggcatctcc
cagatgcacgtctcccggctgctgggccgcaccctcgcggggctgcggaaccggctgcac
ggggccgtttga
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