Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCATT_41660
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Entry
SCATT_41660 CDS
T02095
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
scy
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
scy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCATT_41660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scy03021
]
SCATT_41660
03019 Messenger RNA biogenesis [BR:
scy03019
]
SCATT_41660
Transcription machinery [BR:
scy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCATT_41660
Messenger RNA biogenesis [BR:
scy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCATT_41660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
VAD1-2
AAA
Spore_III_AA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEW96537
UniProt:
G8X0E3
LinkDB
All DBs
Position
4472575..4474614
Genome browser
AA seq
679 aa
AA seq
DB search
MSDTTDLMGVRTDAAPASDASAAPATGAASGSASRRRRSGTGLEGMVLAELQQVASGLGI
KGTARMRKSQLIEVIKERQAGGAGQAEAGKAAPAAEKPKRRATSRARTGEAAEAKAEKAK
AAPAQQQIDIPGQPAGEPAAERRPRRAAAEEPAQPAAEAKAPAEAAPAAKEEQQPEAKAA
KSEAGEGQGEREPRRDRGQKGDRRQRDRRRGEDGGQGDGDRRQADSGDQRRQGDGDRRQG
QDGDRRQGQGQGDDRRQSQGQGQGDDDFEGGRRGRRGRYRDRRGRRGRDDFAAEPQLAED
DVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKEGE
RREKFNALVRLDSVNGMAPETGRGRPEFGKLTPLYPQERLRLENEASALTPRIIDLVAPI
GKGQRGLIVAPPKTGKTMIMQSIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVI
SSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGG
VDSTALYPPKRFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNMELRLDRK
LSDKRIFPAVDVDASGTRKEEILLAPEELGIVWKLRRVLHALDSQQAIELLLDKMKQTKS
NAEFLMQIAKTTPGNGNGD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgcgtacggacgccgcgcccgcctcggacgcc
tccgccgcgcctgccaccggtgctgcctctggtagtgcctctcggcgacgccggtcgggc
accggccttgagggcatggttctggccgaactccagcaggtcgcctcgggcctcggcatc
aagggcacggcccggatgcgcaagagccagctgatcgaggtcatcaaggaacgccaggcc
ggcggcgccggccaggcggaggccggcaaggccgcccccgccgccgagaagcccaagcgc
cgggcgacctcccgggcgcgtaccggcgaggccgcggaggccaaggcggagaaggccaag
gccgcccccgcccagcagcagatcgacatccccggccagcccgccggtgagcccgccgcc
gagcgccgcccccgccgcgccgccgccgaggagccggcccagccggccgccgaggccaag
gccccggccgaggccgcccccgcggccaaggaggagcagcagcccgaggccaaggccgcc
aagagcgaggccggcgagggccagggcgagcgcgagccccgccgcgaccgcggccagaag
ggcgaccgccgtcagcgtgaccgccgccgcggcgaggacggcggccagggtgacggcgac
cgccgccaggccgactccggggaccagcgccgccagggcgacggcgaccgccgccagggc
caggacggcgaccgccgtcagggtcagggtcagggcgacgaccgccgccagagccagggc
cagggccagggcgacgacgacttcgaaggcggccgccgtggccgccggggccgttaccgc
gaccgccggggccgccggggccgcgacgacttcgccgccgagccgcagctcgccgaggac
gacgtgctcatccccgtcgccggcatcctggacatcctggacaactacgcgttcatccgg
acctccggctacctgcccggacccaacgacgtgtacgtctcccttgcccaggtccgcaag
aacggcctgcgcaagggcgaccacgtcaccggtgcggtgcgccagccgaaggaaggcgag
cggcgcgagaagttcaacgcgctggtgcggctggactcggtcaacggcatggcgccggag
accggccggggccgccccgagttcggcaagctcaccccgctgtacccgcaggagcggctg
cggctggagaacgaggccagcgcgctgaccccgcgcatcatcgacctggtcgcgccgatc
ggcaagggccagcgcgggctgatcgtggccccgccgaagaccggcaagaccatgatcatg
cagtccatcgccaacgccatcacgcacaacaaccccgagtgccacctgatggtcgtcctg
gtggacgagcgccccgaagaggtcaccgacatgcagcggtcggtcaagggcgaggtcatc
tcctcgaccttcgaccgtccggccgaggaccacaccaccgtcgcggagctcgccatcgag
cgggccaagcggctggtggagctgggtcacgacgtggtcgtgctgctggactccatcacc
cgtctgggccgtgcctacaacctggcggcgcccgcctccggccgcatcctgtccggtggt
gtcgactccaccgcgctctacccgccgaagcgcttcttcggcgccgcgcgcaacatcgag
gacggcggctcgctgaccatcctggccaccgcgctggtcgagaccggctcgcggatggac
gaggtgatcttcgaggagttcaagggcaccggcaacatggagctgcgcctggaccggaag
ctctccgacaagcgcatcttcccggcggtggacgtggacgcgtccggcacccgcaaggag
gagatcctgctggcgccggaggagctgggcatcgtttggaagctgcgccgggtgctgcac
gcgctcgactcgcagcaggcgatcgagctgctgctggacaagatgaagcagaccaagtcc
aacgccgagttcctgatgcagatcgccaagaccacgccgggcaacggcaacggcgactga
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