Streptomyces cyaneochromogenes: EJ357_04175
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Entry
EJ357_04175 CDS
T06811
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scya
Streptomyces cyaneochromogenes
Brite
KEGG Orthology (KO) [BR:
scya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scya03016
]
EJ357_04175
Enzymes [BR:
scya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EJ357_04175
Transfer RNA biogenesis [BR:
scya03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EJ357_04175
Prokaryotic type
tRNA splicing ligases
EJ357_04175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZQ32737
UniProt:
A0A3Q9EPK4
LinkDB
All DBs
Position
complement(992332..993744)
Genome browser
AA seq
470 aa
AA seq
DB search
MELVEEAPHRFRMDPHGPMRVPGVVFASRALLRDAEQALEQVANVATLPGIVGASYAMPD
IHWGYGFPIGGVAATDVADGGVVSPGGVGFDISCGVRLLAADTDGKALASALTAVMDGLD
RAIPRGAGPGGVWHLTGPGQLERILRGGSRYAVEEGHGESRDLARCEDGGAVADADVDQV
SARARERGLGQVGSLGSANHFLEVQRVDEVYDATAATAFGLSVGQVCVMIHCGSRGLGHQ
ICTDHVRLMDRAMARYDIKVPDRQLACTPVESPEGQRYLGAMAAAANYGRANRQLLSDAA
RRVFRRAAHTRLSLVYDVSHNLAKIETHPVDGARRTLCVHRKGATRAFPPGHPDLPDDLR
AVGQPVLIPGTMGTASYVLVGVAGGDAFASTCHGAGRVLSRHRAARAVGGRELRARLESA
GIAVRPRSLRGLAEETPEAYKDVGEVVAVSEGAGLCRTVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtggaggaggctcctcaccgcttccgtatggacccgcacggtccgatgcgg
gtgcccggcgtggtgttcgcgtcccgggcgttgctgagggacgccgagcaggcgttggag
caggtggccaacgtggccacactgcccgggatcgtcggcgcgtcgtacgccatgccggac
atccactggggctacggcttccccatcggcggcgtcgccgcgaccgacgtggccgacggc
ggggtcgtctcaccgggcggggtcggcttcgacatctcctgcggcgtacggctgctggcg
gccgacaccgacggcaaggcgctggcgtcggcgctgaccgcggtgatggacggcctggac
cgggcgatcccgcgcggcgccgggcccggcggggtgtggcacctgaccgggcccggccag
ctggagcggatcctgcggggcggttcccggtacgcggtggaggaggggcacggcgagtcg
cgcgacctggcgcgctgcgaggacggcggggcggtcgccgacgccgacgtggaccaggtg
agcgcgcgggcacgggagcgcggcctgggccaggtcggcagcctcggttccgccaaccac
ttcctggaggtgcagcgcgtcgacgaggtgtacgacgcgacggcggccaccgcgttcggg
ctctccgtcggccaggtgtgcgtgatgatccactgcggttcccgcggcctcggccaccag
atctgcaccgatcacgtccggctgatggaccgggcgatggctcggtacgacatcaaggtc
cccgaccgccaactcgcctgcacaccggtcgagtcgccggaggggcagcggtacctcggc
gcgatggcggccgcggccaactacggccgcgccaaccgccagttgctgtccgacgcggcc
cgccgggtctttcgccgcgccgcgcacacccggctgtcgctggtgtacgacgtctcccac
aacctcgccaagatcgagacccacccggtggacggggcccgccgcaccctgtgcgtccac
cgcaagggtgcgacccgggccttcccgcccggccacccggacctgccggacgacctgcgc
gcggtcggccagccggtgctgattcccgggaccatgggtaccgcctcgtacgtcctggtg
ggtgtggcaggtggagacgccttcgcctccacctgccacggcgccggccgggtcctcagc
cgccatcgggccgcccgcgcggtgggcggccgggaactgcgggcccgcctggagtcggcg
ggcatcgcggtgcgcccacggtcgctgcggggcctcgcggaggagacgcccgaggcgtac
aaggacgtcggcgaggtggtggccgtgagcgagggcgcgggactgtgccggacggtggcc
cggctggtgccgctgggggtggtcaagggctga
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