Streptomyces cyaneochromogenes: EJ357_21835
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Entry
EJ357_21835 CDS
T06811
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
scya
Streptomyces cyaneochromogenes
Brite
KEGG Orthology (KO) [BR:
scya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scya03019
]
EJ357_21835 (hrpA)
Enzymes [BR:
scya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EJ357_21835 (hrpA)
Messenger RNA biogenesis [BR:
scya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EJ357_21835 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_16
NACHT
AAA_30
NTPase_1
TsaE
ResIII
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
AZQ35805
UniProt:
A0A3S9M9M2
LinkDB
All DBs
Position
4837715..4841695
Genome browser
AA seq
1326 aa
AA seq
DB search
MSTHPAPALGPLAPRLSELSLRDAHRLGRRLEGARKIRKPEARAAVLAEIEAEIAKGEER
IATRRTRVPVVTYPEQLPVSQKKDQIAAAIRDHQVVIVAGETGSGKTTQIPKICMELGRG
VRGMIGHTQPRRIAARTVAERVAEELDTPLGESVGWKVRFTDQVNQDATFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIIEVSGRTYPVEVRYRPLLEEDSDDADRDQITAICDAVEELQGEGKGDILVFLS
GEREIRDTADALVKKNYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSEDDFL
ARPEFTDAEILRTNLASVILQMTAAGLGDIDKFPFIDPPDHRNIRDGVQLLQELGALDPT
QKDVRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPADKQ
AQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
SQLRTVAKQMGIHLSEDDAPADRIHVSLLAGLLSHIGMKDVKESKDSGPGGARKEGGRNE
YLGARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNAKIEPEWVEPLAEHLIKRT
YSEPHWEKDQAAVMAYEKVTLYGVPIIAQRKVNYGRVDPEASRELFIRNALVEGDWRTHH
KFFADNRRLLSEVEELEHRARRRDIVVDDETLFDFYDQKVPDHVVSGAHFDSWWKHKRHE
EPEFLDFEREMLIRESAAAVTKADYPDSWRQGQLKFRVTYQFEPGADADGVTVHIPLQVL
NQVTDEGFDWQIPGLREELVTELIRSLPKPIRRNYVPAPNFAQRFLDTAVPLQEPLTVTM
ARELKRMVGVPFTADDFDWPKVPDHLRITFRIVDERRRKLAEDKDLETLKLRLKPKARQA
LSQAAAATASREGGESLERKGLTDWTIGSLTRVFETRRAGQPVKAYPALVDDGDTVSVRL
FDTEAEQQQAMWKGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHGSIQALFDDCAM
AAADRLIGDFGGPAWDEESYRKLYDKVRAEIVDTTVRAVGQVQQVLAAWQAAERRLKAVR
SPALLPNLTDVRGQLDALVKPGFVTEAGLRRLPDLMRYLIAVDRRLQQMPTNVQRDTTRM
EKVHEMRDEYAWLLEQMPQGRPVPQQVLDVRWMLEELRVSYFAHALGTAYPISDKRIVKA
IDTLAP
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcaccctgcccccgccctcggccccctggccccccgcctgagcgagctctcc
ctgcgcgacgcgcaccggctcggtcggcggctcgaaggtgcgcgcaagatccgtaagccg
gaggcgcgcgccgccgtgctcgccgagatcgaggcggagatcgccaagggcgaggaacgc
atcgccacccgccgcacgcgcgtaccggtggtgacgtaccccgaacagctgccggtcagc
cagaagaaggaccagatcgcggccgccatccgcgaccaccaggtcgtgatcgtcgccggt
gagaccgggtccggaaagaccacgcagatcccgaagatctgcatggagctgggccgcggc
gtacgcggcatgatcggccacacccagccccgccgcatcgccgcgcgcaccgtcgccgag
cgggtggcggaggagctcgacacgcccctcggcgagtccgtcggctggaaggtccgcttc
accgaccaggtgaaccaggacgccaccttcgtcaagctgatgaccgacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctcgggtatctcgcgcagctgctgccgaag
cgtcccgatctcaaggtcgtcatcacctccgcgaccatcgatcccgagcggttctcccgg
catttcggcgacgcgccgatcatcgaggtcagcgggcggacgtatcccgtcgaggtgcgc
taccggccgctcctcgaagaggactccgacgacgcagaccgcgaccagatcaccgcgatc
tgcgatgccgtcgaggagctccagggcgagggcaagggcgacatcctcgtcttcctctcg
ggagagcgggagatcagggacaccgccgacgcgctggtgaagaagaactaccgcttcacc
gaggtgctccccctctacgcccgcctctcgcacgccgagcagcaccgcgtcttccagccc
cacaccgggcgcaggatcgttctggcgaccaacgtcgccgagacctcgctcaccgtcccg
ggcatcaagtacgtcatcgaccccggcttcgcccggatcagccggtacagccaccgcacc
aaggtgcagcggctgcccatcgaggcgatctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtcggacggcatctgcatccgcctctactccgaggacgacttcctc
gcccgcccggagttcacggacgcggagatcctgcggacgaacctcgcctccgtcatcctg
cagatgaccgcggccgggctcggcgacatcgacaagttcccgttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctcctgcaggagctcggcgcgctggacccgacg
cagaaggacgtacgcaagcggctcacggacaccggccgcaagctcgcgcagctccccgtc
gacccgcgcctggcccgcatggtcctggaggccgacaagaacggctgtgtccgcgaggtc
atggtcatagcggccgcgctctccatccaggaccctcgcgaacgcccggccgacaagcag
gcccaggccgaccagcagcacgcccgcttcaaggacgagaccagcgacttcctcgcctat
ctcaacctctggcgctacgtccgcgagcagcagaaggaacgcggatcgtcgtccttccgc
cggatgtgcaagcaggagtacctgaacttcctgcgcattcgcgaatggcaggacatctac
tcgcagttgcgcacggtcgccaagcagatgggcatccacctcagcgaggacgacgccccg
gccgaccgcatccatgtctccctcctcgccggcctgctctcgcacatcggcatgaaggac
gtgaaggagtccaaggactccggcccgggcggcgcccgcaaggagggcggccgcaacgag
tacctcggcgcccgcaacgccaagttcgcgatcttcccgggctcggccctcttcaagaag
cccccgcgcttcgtgatgtcggcggagctggtggagacgagccgcctgtgggcccgcgtc
aacgcgaagatcgagcccgagtgggtcgaaccgctcgccgagcacctgatcaagcgcacc
tactccgaaccgcactgggagaaggaccaggcggcggtgatggcgtacgagaaggtcacg
ctgtacggcgtcccgatcatcgcccagcgcaaggtgaactacggccgcgtcgaccccgag
gccagccgcgagctgttcatccgcaacgccctggtcgagggcgactggcgcacgcaccac
aagttcttcgccgacaaccgcaggctcctcagcgaggtcgaggagctggagcaccgggcc
cggcgccgggacatcgtcgtcgacgacgagacgctgttcgacttctacgaccagaaggtc
cccgaccacgtcgtctccggcgcgcacttcgactcctggtggaagcacaagcggcacgag
gagccggagttcctggacttcgagcgcgagatgctcatccgggagtcggcggcggcggtc
accaaggccgactatcccgactcgtggcggcaggggcagctcaagttccgtgtcacgtac
cagttcgagccgggcgcggacgccgacggcgtgaccgtccacatcccgctccaggtcctc
aaccaggtcacggacgagggcttcgactggcagatcccgggcctcagggaggagttggtg
acggagctgatccgttccctcccgaagccgatccgccgcaactacgtgccggcgccgaac
ttcgcgcagcggttcctggacacggcggtgccgctgcaggagccgctgacggtgaccatg
gcgcgcgagctgaagcgcatggtcggagtgcccttcaccgccgacgacttcgactggccc
aaggtccccgaccacctgcgcatcaccttccggatcgtcgacgagcgccgtcgcaagctg
gccgaggacaaggacctggagaccctgaagctccgtctgaagccgaaggcacggcaggcc
ctctcgcaggccgcggcggccaccgcctcccgcgagggcggcgagtccctggagcgcaag
ggcctgaccgactggaccatcggctccctcacccgcgtcttcgagacccgtcgcgccggc
cagccggtcaaggcgtatccggcgctggtcgacgacggcgacacggtgtcggtccgcctc
ttcgacacggaggcggagcagcagcaggcgatgtggaagggcacgcgccggctgatcctc
cgcaacatcccggtcaacccggcgaagttcgcgtccgagaagctcacgaacgcccagaag
ctggcgctgtccgccaacccgcacggctccatccaagccctgttcgacgactgcgcgatg
gcggccgcggacaggctgatcggcgacttcggggggccggcgtgggacgaggagtcgtat
cggaagctgtacgacaaggtgcgcgccgagatcgtcgacacgacggtccgtgcggtgggc
caggtgcagcaggtcctcgccgcctggcaggccgctgaacgccgcctgaaggccgtacgc
agccccgccctgctcccgaacctcacggacgtgcgagggcagctggacgcccttgtgaag
cccggattcgtgaccgaggccggtctgcggcgcctgcccgacctcatgcgctacctgatc
gcggtggaccgccgtctccagcagatgccgaccaacgtccagcgcgacacgacgcgcatg
gagaaggtccacgagatgcgggacgagtacgcctggcttctggaacagatgccgcagggc
cgcccggtgccgcagcaggtcctggacgtccgctggatgctggaggagctccgcgtcagc
tatttcgcccacgcgctgggcacggcgtaccccatctccgacaagcggatcgtgaaggcg
atcgacacgctcgccccgtaa
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