KEGG   Stenotrophomonas cyclobalanopsidis: AB1723_00045
Entry
AB1723_00045      CDS       T10607                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
scyc  Stenotrophomonas cyclobalanopsidis
Pathway
scyc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:scyc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AB1723_00045 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:scyc03021]
    AB1723_00045 (rpoB)
   03400 DNA repair and recombination proteins [BR:scyc03400]
    AB1723_00045 (rpoB)
Enzymes [BR:scyc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AB1723_00045 (rpoB)
Transcription machinery [BR:scyc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AB1723_00045 (rpoB)
DNA repair and recombination proteins [BR:scyc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AB1723_00045 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: XCZ87601
LinkDB
Position
5466..9620
AA seq 1384 aa
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYRDFLQENIDPAKRADYGLHAALKS
VFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDDYIVG
RILSHDVVDASTGELLAQANDEISDEQLQNFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKET
TGEAVLYDSKYFGERNDEESKRLVGAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNKYGFLETPYRKVVDGKVFDEVEFLSAIEENEYVIAQANALTNADSVLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVVEEEIVGATDAGVDIY
NLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGGAGLK
KGDVISDAYLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMMEAQAAVADLRKFLDDIYNHDDTNVANR
VDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq 4155 nt   +upstreamnt  +downstreamnt
atgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgc
tcgatcctcgaagtgccgttcctgctggccatccaggtggactcctaccgtgatttcctg
caggaaaacatcgatccggccaagcgcgccgattacggcctgcacgctgcgctgaagtcg
gtcttcccgatcgccagctacagcggcaatgccgccctggaatacgtcggctacaagctg
ggcgagccggtcttcgacgagcgtgagtgccgtcagcgtggcatgagctacggtgcgccg
ctgcgcgtgaccgtgcgcctggtcatctacgatcgcgagtcgtcgaccaaggccatcaag
tatgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgagaacggcacc
ttcatcgtcaatggcaccgagcgcgtcatcgtttcgcagctgcaccgttcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccttaccgcggttcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgatcgccgccgcaagctgccggtgtcgatcctgctgcgcgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggat
gaaggcgtccagctggagctggtgccggagcgcctgcgtggcgaaaccctgggcttcgac
ctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcgcgccacatc
aagcagctggaagcctcgggcattgccgccctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgatgcctcgaccggcgaactgctggcccaggccaac
gacgagatcagcgacgagcagctgcagaacttccgcaaggccggcgtcgatgcggtgggc
accctgtgggtgaacgacctggatcgtggcccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacccagctggaagccctggtcgaaatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccgcggtcggccgcatgaagttcaaccgtcgcgtgggccgcaaggaaacc
accggcgaagccgtgctgtatgacagcaagtacttcggcgagcgcaacgacgaagagtcc
aagcgcctggtcggtgcccacggcgacagttccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtcggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtcggaaggcctgaccccgcaggagctg
atcaacgccaagccggttgctgctgccatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggatcagaacaacccgctgtcggaagtgacccacaagcgtcgcgtctcggcc
ctgggcccgggcggcctgacccgtgagcgcgctggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaacaagtacggtttcctcgagaccccgtaccgc
aaggtggtggacggcaaggtcttcgacgaagtcgaattcctgtcggccatcgaagaaaac
gagtacgtcattgcgcaggccaacgccctgaccaatgccgacagcgtgctgaccgagcag
ttcgttccgtgccgtttccagggcgaatcgctgctgaagccgccggcggaagtccacttc
atggacgtctcgccgatgcagaccgtgtcgatcgcggccgcgctggttccgttcctggag
cacgatgacgcaaaccgcgccctgatgggcgcgaacatgcagcgtcaggccgtgccgacc
ctgcgtgcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgtgactcc
ggtgtgaccgtcaacgcccgtcgtggtggcgagatcgtgcagatcgatgccgcgcgcatc
gtggtcaaggtggtcgaggaagaaatcgtcggtgccaccgacgccggcgtcgacatctac
aacctggtcaagtacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtc
caggtgggtgacgtcatcgcccgcggcgacgtgctggccgacggtccgtccaccgacatc
ggcgaactggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctttccgagcgcgtggtggaagaggatcgctacaccacgatc
cacatcgaagagctgacctgcgtcgcgcgtgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtttccgagcaggcgctgaaccgcctggacgaaagcggcgtggtg
tacatcggtgcggaagtccgcgccggcgacatcatggtcggcaaggtcaccccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgttaaggacagctcgctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaagaatct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacatgcgtctgcgttcgcagatcgtgggcaaggtggtcaacggtggtgccggcctgaag
aagggcgacgtcatctccgacgcctacctggacggcctgaagaaggctgactggttcgcc
ctgcgcatgaaggacgaggacgcttcggaagccatcgagcgcgcccagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgccggc
gacgacctcgctccgggcgtgctgaagatggtcaaggtcttcctggccgtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaacgtg
gtgccggtcgaggacatgccgtacatggcctcgggtgaaaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgcatgaacatcggccagatcctggaagtgcacctgggctgg
gcagccaagggcctgggtcgcaagatccaggcgatgatggaagcccaggctgcggttgcc
gacctgcgcaagttcctggacgacatctacaaccacgacgacaccaacgtggccaaccgt
gtcgacctgtcgcagttcagcgacgaggaactgctgcgtctggcccgtaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggcgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagtggccagacccagctctacgacggccgcaccggt
gaagccttcgaccgccacaccactgtcggttacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtcctggtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagacaactga

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