Stenotrophomonas cyclobalanopsidis: AB1723_00045
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Entry
AB1723_00045 CDS
T10607
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB1723_00045 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyc03021
]
AB1723_00045 (rpoB)
03400 DNA repair and recombination proteins [BR:
scyc03400
]
AB1723_00045 (rpoB)
Enzymes [BR:
scyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB1723_00045 (rpoB)
Transcription machinery [BR:
scyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB1723_00045 (rpoB)
DNA repair and recombination proteins [BR:
scyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB1723_00045 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
XCZ87601
LinkDB
All DBs
Position
5466..9620
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYRDFLQENIDPAKRADYGLHAALKS
VFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDDYIVG
RILSHDVVDASTGELLAQANDEISDEQLQNFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKET
TGEAVLYDSKYFGERNDEESKRLVGAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNKYGFLETPYRKVVDGKVFDEVEFLSAIEENEYVIAQANALTNADSVLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVVEEEIVGATDAGVDIY
NLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGGAGLK
KGDVISDAYLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMMEAQAAVADLRKFLDDIYNHDDTNVANR
VDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgc
tcgatcctcgaagtgccgttcctgctggccatccaggtggactcctaccgtgatttcctg
caggaaaacatcgatccggccaagcgcgccgattacggcctgcacgctgcgctgaagtcg
gtcttcccgatcgccagctacagcggcaatgccgccctggaatacgtcggctacaagctg
ggcgagccggtcttcgacgagcgtgagtgccgtcagcgtggcatgagctacggtgcgccg
ctgcgcgtgaccgtgcgcctggtcatctacgatcgcgagtcgtcgaccaaggccatcaag
tatgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgagaacggcacc
ttcatcgtcaatggcaccgagcgcgtcatcgtttcgcagctgcaccgttcgccgggcgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccttaccgcggttcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgatcgccgccgcaagctgccggtgtcgatcctgctgcgcgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggat
gaaggcgtccagctggagctggtgccggagcgcctgcgtggcgaaaccctgggcttcgac
ctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcgcgccacatc
aagcagctggaagcctcgggcattgccgccctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgatgcctcgaccggcgaactgctggcccaggccaac
gacgagatcagcgacgagcagctgcagaacttccgcaaggccggcgtcgatgcggtgggc
accctgtgggtgaacgacctggatcgtggcccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacccagctggaagccctggtcgaaatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccgcggtcggccgcatgaagttcaaccgtcgcgtgggccgcaaggaaacc
accggcgaagccgtgctgtatgacagcaagtacttcggcgagcgcaacgacgaagagtcc
aagcgcctggtcggtgcccacggcgacagttccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtcggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtcggaaggcctgaccccgcaggagctg
atcaacgccaagccggttgctgctgccatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggatcagaacaacccgctgtcggaagtgacccacaagcgtcgcgtctcggcc
ctgggcccgggcggcctgacccgtgagcgcgctggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaacaagtacggtttcctcgagaccccgtaccgc
aaggtggtggacggcaaggtcttcgacgaagtcgaattcctgtcggccatcgaagaaaac
gagtacgtcattgcgcaggccaacgccctgaccaatgccgacagcgtgctgaccgagcag
ttcgttccgtgccgtttccagggcgaatcgctgctgaagccgccggcggaagtccacttc
atggacgtctcgccgatgcagaccgtgtcgatcgcggccgcgctggttccgttcctggag
cacgatgacgcaaaccgcgccctgatgggcgcgaacatgcagcgtcaggccgtgccgacc
ctgcgtgcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgtgactcc
ggtgtgaccgtcaacgcccgtcgtggtggcgagatcgtgcagatcgatgccgcgcgcatc
gtggtcaaggtggtcgaggaagaaatcgtcggtgccaccgacgccggcgtcgacatctac
aacctggtcaagtacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtc
caggtgggtgacgtcatcgcccgcggcgacgtgctggccgacggtccgtccaccgacatc
ggcgaactggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctttccgagcgcgtggtggaagaggatcgctacaccacgatc
cacatcgaagagctgacctgcgtcgcgcgtgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtttccgagcaggcgctgaaccgcctggacgaaagcggcgtggtg
tacatcggtgcggaagtccgcgccggcgacatcatggtcggcaaggtcaccccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgttaaggacagctcgctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaagaatct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacatgcgtctgcgttcgcagatcgtgggcaaggtggtcaacggtggtgccggcctgaag
aagggcgacgtcatctccgacgcctacctggacggcctgaagaaggctgactggttcgcc
ctgcgcatgaaggacgaggacgcttcggaagccatcgagcgcgcccagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgccggc
gacgacctcgctccgggcgtgctgaagatggtcaaggtcttcctggccgtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaacgtg
gtgccggtcgaggacatgccgtacatggcctcgggtgaaaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgcatgaacatcggccagatcctggaagtgcacctgggctgg
gcagccaagggcctgggtcgcaagatccaggcgatgatggaagcccaggctgcggttgcc
gacctgcgcaagttcctggacgacatctacaaccacgacgacaccaacgtggccaaccgt
gtcgacctgtcgcagttcagcgacgaggaactgctgcgtctggcccgtaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggcgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagtggccagacccagctctacgacggccgcaccggt
gaagccttcgaccgccacaccactgtcggttacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtcctggtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagacaactga
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integrated database retrieval system
