Stenotrophomonas cyclobalanopsidis: AB1723_02160
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Entry
AB1723_02160 CDS
T10607
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB1723_02160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyc03400
]
AB1723_02160 (mfd)
Enzymes [BR:
scyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB1723_02160 (mfd)
DNA repair and recombination proteins [BR:
scyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB1723_02160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
SWI2_SNF2
RecG_dom3_C
ERCC3_RAD25_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XCZ87990
LinkDB
All DBs
Position
complement(436759..440223)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLVQAARAHDAPLLVIARDNHGANQLEA
DLQTLIGTDPDLSVVAFPDWETLPYDRFSPHPDIISQRLAALHRLPTLKRGLVVVPVQTA
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADQPLRVELLDEDIDSIRAFDPESQRSLDKVESVHMLPGREVPMDDASIARVLGTLRE
RFDVDTRRSSLYQDLKSGLAPAGIEYYLPLFFDRTATLFDYLPAGSLPVVCTGADEAAVA
FWAQTADRYEQRRHDVERPLLPPSSLYLSPELLRERLNDAARIEVWAPEHARIADAHALG
DQPLPPLPVAARDAPAGEALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLADDARFAIAVAPLEDGFALDEPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSSKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDDALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGVAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSEALRELQVEMIDRFGLLPDAAKHLFAIAELKLQAN
ALGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMDGPDKLRIKHPLPLPEDR
FNAARALLLTLAVR
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacttcataccccgccccgccgttgcctcgcgccggccagctccgcgcctgg
tggcgcgcccccgcctcgccgaccgccctggcctggtacctggtccaggccgcgcgcgcg
cacgacgcgccgctgctggtgatcgcccgtgacaaccacggcgccaaccagctcgaagcc
gacctgcagaccctgatcggcaccgatccggacctttcggtggtcgcgttccccgattgg
gaaacgctgccctacgaccgcttcagtccgcacccggacatcatttcgcagcgcttggcc
gccctgcaccgcctgcccacgctcaagcgtggcctggtggtggtgccggtgcagacggcg
ctgcagcagctggccccacgcagctacgtcatcgggggaagcttcgacctgaaggtcggc
cagcgcctggacctggaagccgagaagcgccgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggcgatttcgccgtgcgcggtggcctgctcgacgtgttcccg
atgggcgccgaccagccgctgcgggtggagctgctggacgaggacatcgattcgatccgc
gccttcgatccggaaagccagcgctcgctggacaaggtcgagtcggtgcacatgctgccc
ggccgcgaagtgccgatggacgatgccagcatcgcccgcgtgctgggcacgctgcgtgag
cgcttcgatgttgatacccggcgcagctcgctgtaccaggatctgaaatccgggctggcc
ccggctggcatcgagtattacctgccgctgttcttcgaccgcaccgccaccctgttcgac
tacctgcccgccggcagcctgccggtggtgtgcaccggcgcggatgaagcggccgtcgcc
ttctgggcgcagaccgctgaccgttacgagcagcgccgccacgatgtagagcggccgctg
ctgccgccgtcgtcgctgtacctgtcgccggaactgctgcgcgaacgcttgaacgatgcc
gcgcgcatcgaagtctgggcgcccgagcacgcacgcatcgctgatgcgcatgcgctgggt
gaccagccgctgccgccgctgccggtggctgcgcgcgacgctcccgctggcgaggcgctg
aaatccttcctcggccactacccgggccgggtgctgatcgccgccgattcaccgggccgc
cgtgaagccctgctggaagtgctgcaggccgccgagctgaagccgccggtggtggccgac
ctgcccagcttcctcgccgatgatgcgcgcttcgccatcgccgtggcgccgctggaagac
ggcttcgcgctggacgagccgcgcatcgcggtgctcaccgagcgccagctgttccccgag
cgcgccggcagcacccgccgcacgcgccgtgccggccgcgagccggaagccatcatccgc
gacctcggggagctgaccgagggcgcgccgatcgtgcacgaagaccatggcgtcggccgc
taccgcggcctgatcgcgatggacgtcggcggcatgcctggcgagtttctggaaatcgaa
tacgccaagggcgaccgcctgtacgtgccggtggcccagctgcacctgatcagccgctat
tccggtgcatcggcggaaaccgcgccgctgcattcgctggggggcgaacagtggaccaag
gccaagcgcaaggcggccgagaaggtgcgcgacgtggccgccgaactgctggagatccag
gctcgccgccaggcgcgtgccggcctggcgctgcaggtggaccgcgcgatgtacgaaccg
ttcgcggccggcttcccgttcgaggaaacccccgaccagctggccgccatcgacgcgacc
ctgcgcgacctggccagcagccagccgatggaccgcgtggtctgcggtgacgtcggcttc
ggcaagaccgaagtggccgtgcgcgcggcgtttgccgcggccagcgccggcaagcaggtg
gcggtgctggtgccgaccactctgctcgccgaacagcactaccgcaatttccgcgaccgc
ttcgccgattacccgctgaaggtggaagtgctgtcgcgcttcaagagcagcaaggaaatc
aaggccgaactggagaaggtcgccgcgggcaccatcgacgtcatcgtcggtacccaccgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggagcag
cgtttcggcgtgcgccagaaggaggccctgaaggcgctgcgcgccaacgtgcacctgctg
accctgaccgccacgccgatcccgcgtaccttgaacatggcgatggccggcctgcgcgac
ctgtcgatcatcgccaccccgccgccgaaccggctggcggtacagaccttcatcacccag
tgggacgacgcgctgctgcgcgaagccttccagcgcgagctggcgcgtggtggccagctg
tacttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaagcgcgcatcggcgtcgcccacgggcagatgcccgagcgtgagctggaaaag
gtgatgctggatttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgcttcggc
ctggcccagctgcaccagctgcgcggccgcgttggtcgttcgcaccaccgtgcgtatgcc
tacctggtggcgccggaccgtcgctcgatcaccccggatgcggagaagcgcctggaagcg
atcgcctcgatggacgaactcggcgccggctttaccctggccacgcacgatctggaaatc
cgtggcgccggcgaactgctgggcgaggaccagagcgggcagatggccgaagtgggcttc
agcctgtacaccgagctgctggaacgcgcggtgcgcagcatcaagcagggcaagctgccc
gacctggatgccggcgaggaagtgcgcggtgccgaagtggaactgcatgtgccggcgctg
atcccggaggactacctgccggacgtgcacacccgcctgaccctgtacaagcgcatttcc
agcgcgcgtgacagcgaggcgctgcgcgagctgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgccgccaagcacctgttcgccattgccgaactgaagctgcaggccaac
gccttgggcatccgcaagctggacctgggcgagaacggcggccgcatcgtgttcgaatcc
aagccgaacatcgacccgatggcggtgatccagctgatccagaagcagcccaacctctat
gccatggacgggccggacaagctgcgcatcaagcatccgctgccgttgccggaggaccgc
ttcaacgcggcccgcgcactgcttctgacgctggcggtgcgctga
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