Stenotrophomonas cyclobalanopsidis: AB1723_02410
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Entry
AB1723_02410 CDS
T10607
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03030
DNA replication
scyc03430
Mismatch repair
scyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB1723_02410 (dnaE)
03430 Mismatch repair
AB1723_02410 (dnaE)
03440 Homologous recombination
AB1723_02410 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyc03032
]
AB1723_02410 (dnaE)
03400 DNA repair and recombination proteins [BR:
scyc03400
]
AB1723_02410 (dnaE)
Enzymes [BR:
scyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AB1723_02410 (dnaE)
DNA replication proteins [BR:
scyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AB1723_02410 (dnaE)
DNA repair and recombination proteins [BR:
scyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AB1723_02410 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Ferredoxin_N
Motif
Other DBs
NCBI-ProteinID:
XCZ88035
LinkDB
All DBs
Position
complement(493957..497556)
Genome browser
AA seq
1199 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGMPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMITEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPDWLKAGNANLFALAGRDSLAGRLALDGKHDLAEQQLADWQRAFGDGLHL
ELTRTGRDGEETFNRFALMAAGQRGLPVVASNDVRFLAPTDFSAHEARVCISTGRVLDDP
KRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPNYPVPDDET
LDTWIQKMSRDGLEERLQKNPLAPGKTREEYFERLEFELNTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVSKLIPNILGIH
LKDALGKGKEGPSSEMASAELIQRYESEDDVRDLIDLALQLEDLTRNAGKHAGGVVIGPE
PLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRH
ERAGIPPVDIAAIPLDDAPTYKDIFANGNTGAVFQFESSGMRRLLKDARPDRFEDLIALV
SLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSL
GGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIFDLMEKFAGYGFNKSHAA
AYALVSYQTAWLKRHYPAEFMAATLSSDLDNTEKVVGFLDEVRNLGLTVLPPKVNHSAFM
FEAVTPDTIQYGLGAIKGVGQGACEAVVDERLRGGDYKDLLDFCTRVGSAKLNRRTLEAM
INCGALDELGHNRASLMLQLPEVIKATEQMARERASGQNSLFGGPDPSAVTIQLDLAEAE
EWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGSVEKIWSSSNSGGGGGNGGE
KRWRPEVPTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILV
VKGGLREDEFNGGYALRIRQCWDFDEVCANYATRLSLRLDLRQQRPVWERVNALLDRHRP
GRTPLRLDLLLKGPQGGVAGMLDVSGQSAVRIDSKLMEALRADPAVRALKVRYSPPWAN
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgcttcgtacatctccacgtccacaccgagttctcgctggcggactcg
accatccgcgtgccggccaaaccggaccaggcggacccgaaaaaggccaagcaggccaac
ctgctgtcgcgctcggtggaactcggcatgcccgcgctggcggtgaccgacctgaacaac
ctgttcgccctggtcaagttctacaaggccgccgaaggcgtgggcatcaagcccatcgcc
ggcgccgacgtgatgatcaccgaggaaggccaggacccgtggcggatgaccctgctgtgc
cgcgaccgcgagggctacctcagcctgtcgcggctgctgacccgtgcctggatggaaggc
caccgccccgaaggcggcgtcgccatccacccggactggctgaaggccggcaacgccaac
ctgttcgccctggccggccgtgacagcctggccggtcgcctggcactggacggcaagcac
gacctagccgagcaacagctggccgactggcagcgcgcgttcggcgatggcctgcacctg
gagctgacccgcaccggccgcgatggcgaggaaaccttcaaccgcttcgcgctgatggcc
gccggccaacgcggcctgccggtagtggccagcaacgacgtgcgcttcctggcgccgacc
gatttcagcgcgcacgaagcgcgcgtgtgcatttccaccggccgcgtgctggacgatccc
aagcgcccgcgcgagtacagcgaccagcagtacctgaagtcggccgaggagatgtgtgcg
ctgttcgccgacatccccgatgcgatcgacaacacgctggcgctggccgagcgctgcaac
atcgagatgcggctgggcacctacttcctgcccaactacccggtgcccgacgacgagacg
ctggacacctggatccagaagatgtcgcgcgacggcctggaagagcgcctgcagaagaac
ccgctggcgccgggcaagacccgcgaagaatattttgaacgtctggagttcgagctcaac
accatcatcaagatgggcttcccgggctacttcctgatcgttgccgacttcatccagtgg
ggcaagaaccagggcatcccgatcggccccggccgtggttcgggcgccggttcgctggtg
gcgtgggcgctgaagatcaccgatctggacccgctgccgtacaacctgctgttcgagcga
ttcctgaacccggaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaagtcatcgactacgtcgcgcgcaagtacggccgcgaacgcgtcagccagatc
atcacctacggcaccatggccgccaaggcagtggtgcgcgactccggccgcgtgctgggc
ttcccgtacggcctggtcgacggcgtttccaagctgatcccgaacatcctcggcatccac
ctgaaggatgcgctgggcaagggcaaggaaggcccgagctcggaaatggcctcggccgaa
ctgatccagcgctacgagagcgaggacgatgtccgcgacctgatcgacctggcgctgcag
ctggaagacctgacccgcaacgccggcaagcacgccggtggcgtggtgatcgggcccgag
ccgctgagcgagttctgcccgctgtacgccgaacacgatgaaaacggcttgggcaagaac
ccggtcacccagttcgacaagaacgacgtggaagaagtcggcctggtgaagttcgacttc
ctcggcctgcgcacgctgacgatcatcgactgggcagtgaaggcgatcaacaagcgccac
gagcgcgccggcatcccgccggtggatatcgcggcgatcccgctggacgatgcgcccacc
tacaaggacatcttcgccaacggcaacaccggcgcggtgttccagttcgaatcctcgggc
atgcgccgcctgctgaaggacgcgcgccccgaccgcttcgaagacctcatcgcgctggtg
tcgctgtaccgacccggcccgatggacctgattccctccttcaacgcgcgcaagcacggc
caggaagaaatcatctatcccgatccgcgcaccgaagcgatcctgaaggacacctacggc
atcatggtgtaccaggagcaggtgatgcagatggcgcagatcgtcggcggctactcgctg
ggcggcgccgacctgctgcgccgtgcgatgggcaagaaggtgccggccgaaatggccaag
caccgcgagatcttccgcgagggcgcggccaaggacggcgtcgacgaagccaaggccgat
gcgatcttcgacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgcc
gcctacgcgctggtcagctaccagaccgcttggctcaagcgccattacccggccgagttc
atggcggccacgctgtcctcggacctggacaacaccgaaaaggtggtcggcttcctggac
gaggtgcgcaacctcggcctgaccgtgctgccgccgaaggtgaaccactcggccttcatg
ttcgaagcggtcacgccggacaccatccagtacggcctgggcgcgatcaagggcgtcggc
cagggtgcctgcgaagcggtggtggacgagcgcctgaggggcggcgactacaaggacctg
ctcgacttctgtacccgcgtcggttcggccaagctcaaccgccgcacgctggaagcgatg
atcaactgcggcgcgctggacgagctgggccacaaccgcgcctcgctgatgctgcagctg
ccggaggtgatcaaggccaccgagcagatggcgcgcgagcgtgcctcgggccagaactcg
ttgttcggcggtcccgacccgagcgccgtgaccatccagctggacctggccgaagccgag
gaatggccgctgctgcagcgcctgaacggcgagcgcgacacgctgggcttctacctcagc
ggccacccgttcgacccgtggcgcgatgatgtgcgcgacctggtcggcaacgacctgggc
tcggtggagaagatctggagttccagcaacagcggtgggggcggtggcaacggcggcgag
aagcgctggcgcccggaagtgccgaccgtgctggccggacaggtggtcggtgtgcgccgc
aagggcgaaagccagatcttcatccagctcgaggatggccgcggccgcgtcgagtgcagc
gccttctccgatgccatggccgagttcggccacctgatgaccaaggaccgcatcctggtg
gtcaagggtggcctgcgcgaggacgagttcaatggcggctacgcactgcgcatccgccag
tgctgggacttcgatgaggtctgcgccaactacgccacgcgcctgtcgctgcgcctggac
ctgcgccagcagcgcccggtctgggagcgcgtcaatgccctgctcgaccgccaccgtcca
gggcgcacgccgctgcgcctggacctgctgctgaagggtccgcagggcggcgtagccggt
atgctcgacgtgtccgggcagagcgcggtgcgcatcgattccaagctgatggaagcgctg
cgcgccgacccggccgtgcgcgcgctgaaagtgcgctacagcccgccgtgggccaactga
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