Stenotrophomonas cyclobalanopsidis: AB1723_02620
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Entry
AB1723_02620 CDS
T10607
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB1723_02620 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyc03019
]
AB1723_02620 (rnr)
03016 Transfer RNA biogenesis [BR:
scyc03016
]
AB1723_02620 (rnr)
Enzymes [BR:
scyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB1723_02620 (rnr)
Messenger RNA biogenesis [BR:
scyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB1723_02620 (rnr)
Transfer RNA biogenesis [BR:
scyc03016
]
Prokaryotic type
tRNA degradation factors
AB1723_02620 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
XCZ88073
LinkDB
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Position
544111..546570
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AA seq
819 aa
AA seq
DB search
MTTKKPRKGGSKSRSQAPTKGAKAGAARTTKPGKPLPGWFPELNEGGAPPRGRKGRGMDA
AAPGPARKLPPAGKVIDDPYAAREAEKYEQPIASREAILALLERCEGPQTAEELGARLGL
TAADRAEALSRRLGAMVRDGQLVQNRRGGFAPIQTLNLITGVVIANPEGFGFLRPVEGGD
DLFLPPYEMRKVMHGDKVLARVTGIDHRGRREGSIARVLERGMTRLIGRFSIEMGINYVV
PDDKRIQRNVQVPPDQTGGARDGQLVVCELTQAPDSRRPPIGRIIAVLGDKLTASLVVET
AIHGHELPFEFPQDVLDEAASVPMVVEPAMIGDRVDLRSTPLVTIDGEDAKDFDDAVYCE
PNADGFRLVVAIADVSNYVRPGTPLDEEAQKRATSVYFPGFVVPMLPETLSNGICSLMPK
VDRMCFVCDMQIDRDGVVSHSRFYEAVMNSHARLTYTQVWKAVGEDDADTKAWMGPLLPQ
VQRLHQLYKVLSKARAKRGAIEFESSEVRFVLDNRGEVTQAGMLVRNDAHKLIEECMIAA
NVEAAKYLLSRHVPAPYRVHEKPPETKFADLLEFLKEFKLSLPPWSKVRPGDYTKLLKKI
RDRPDATLLESVLLRSQSLAVYSPDNNGHFGLALEAYAHFTSPIRRCPDLLVHRAIKHAL
SGKPLDKFTYNAREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVISGV
TSFGLFVELDDSKVQGLVHVTQLPQDYYKFDATRKTLTGERRGSSYRLGDRVRILVLKAS
MEERKIDFRLVEHKGEDEGDALPPLPERGKPAKRTKKQY
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaaaaaccacgcaagggcgggagcaagtcccgcagccaggccccgaccaag
ggcgccaaggcgggcgcagcccgcaccaccaagccgggcaagccgctgccgggctggttc
cccgaattgaatgaaggcggtgcaccgccacgcggccgcaagggccgcggcatggatgcc
gccgcaccgggcccggcccgcaagctgccgccggccggcaaggtgatcgacgatccctat
gccgcccgcgaagcagagaagtacgaacagcccatcgccagccgcgaggccatcctggcc
ctgctggaacgctgcgaagggccgcagaccgccgaggaactgggcgcgcgcctgggcctg
accgcggccgaccgtgccgaggcactgtcgcgccggctgggtgccatggtccgagacggc
cagctggtgcagaaccgtcgtggcggcttcgcgccgatccagaccttgaacctgatcacc
ggcgtggtgatcgccaacccggaagggttcggcttcctgcgcccggtcgagggcggcgac
gatctgttcctgccgccgtatgaaatgcgcaaggtgatgcacggcgacaaggtgctggcc
cgcgtgaccggcattgaccaccgtggccgccgagaaggcagtatcgcccgcgtgctcgag
cgcggcatgacccgcctgatcggtcgcttcagcattgaaatgggcatcaattacgtggtg
cccgatgacaagcgcatccagcgcaacgtgcaggtaccgccggaccagaccggtggcgcg
cgcgatggccagctggtggtctgcgaactgacccaggcaccggacagccgccgcccgccg
atcggccgcatcatcgccgtgctcggcgacaagctgaccgcctcgctggtggtggagacc
gccatccacggccacgaactgccgttcgagttcccgcaggacgtgctggacgaagccgcc
tcggtgccgatggtggtcgagccggcgatgatcggcgaccgcgtcgacctgcgcagcacg
ccgctggtgaccatcgatggtgaggatgccaaggacttcgacgatgcggtctactgcgaa
ccgaatgccgatggcttccgcctggtggtggccattgccgatgtctccaactacgtgcgc
cccggcacgccgctggacgaggaagcgcagaagcgtgccacgtcggtgtacttcccgggc
ttcgtggtgccgatgctgccggagactctgtccaacggcatctgctcgctgatgcccaag
gtcgaccgcatgtgcttcgtctgcgacatgcagatcgaccgcgacggcgtggtcagccat
tcgcgcttctacgaagcggtgatgaactcgcacgcgcgcctgacctacacccaggtgtgg
aaggcggtgggcgaggacgatgccgataccaaggcctggatgggcccgctgctgccgcag
gtgcagcgcctgcaccagctgtacaaggtgctgtccaaggcgcgcgccaagcgcggcgcc
atcgagtttgaaagcagcgaagtgcgcttcgtgctggacaaccgtggcgaagtgacccag
gccggcatgctggtgcgcaatgatgcgcacaagctgatcgaggaatgcatgatcgcggcc
aacgtggaggcggccaagtacctgctgtcgcgccatgtgccggccccgtaccgcgtccac
gaaaaaccgccggagaccaaattcgccgacctgctggaattcctcaaggagttcaagctg
agcctgccgccgtggtcgaaggtgcgcccgggcgactacaccaagctgctgaagaagatc
cgcgatcgtcccgacgcaacgctgctggaatcggtgctgctgcgcagccagagcctggcg
gtgtacagcccggacaacaatggtcacttcggcctcgccctggaggcgtacgcgcacttc
acctcgccgatccgtcgttgtcccgacctgctggtgcaccgtgcgatcaagcacgcgctg
tccggcaagccgctggacaagttcacctacaacgcccgcgagatggccgcgctggcgctg
cagtgttccgagcgcgagcgccgtgcagacgaggccgaacgcgaggttgacgagcgttac
cgcgccgcgtggatggaaaagcacgtgggcggccagttcgacggcgtgatcagcggcgtg
accagcttcggtctgttcgtggagctggatgattccaaggtgcagggcctggtccatgtg
acccagctgccgcaggactattacaagttcgacgccacccgcaagacgctgaccggcgaa
cgccgcggcagcagctaccggttgggcgaccgcgtgcgcatcctggtgctgaaggccagc
atggaagagcgcaagatcgatttccgcctggtcgagcacaagggcgaggacgagggtgat
gccctgccgccgctgcccgaacgcggcaagcctgccaagcgcacgaaaaagcagtattga
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