Stenotrophomonas cyclobalanopsidis: AB1723_04260
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Entry
AB1723_04260 CDS
T10607
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scyc03009
]
AB1723_04260 (dbpA)
Enzymes [BR:
scyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB1723_04260 (dbpA)
Ribosome biogenesis [BR:
scyc03009
]
Prokaryotic type
rRNA helicases
AB1723_04260 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
PRAI
Motif
Other DBs
NCBI-ProteinID:
XCZ88365
LinkDB
All DBs
Position
complement(874363..875739)
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AA seq
458 aa
AA seq
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MTDFSTLPLSPALQPGLDALGYTTLTPIQAQSLPAILDRRDVIAQAPTGSGKTAAFGLGL
LQAIDPSLIRVQALVLCPTRELADQVAKQIRKLATGIPNLKLLLLVGGVPLGPQLASLEG
HDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRTHKDRQS
LLFSATFPDSIRQIARDLLRDALEVTVEGADQAPAIRHLFCEVEPAHRQKALAGLLLKYT
PESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLRLANRSCNVLVASDV
AARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRAEAVEAHL
GQPLDWQKTPLATSRPAQLPQAAMRTLRIDGGKTDKLRPGDILGALTGDAGLSGKHIGKI
AIFPTRSYVAIAREQVNRAVAKLEAGKIKGRRFRVRMM
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgactgacttttcgaccctgccgctgagcccggccctgcagcccggcctggacgccctc
ggctacaccacccttacgccgatccaggcgcagagcctgccggcgatccttgatcgccgc
gatgtgatcgcacaggcgccgacgggcagcggcaagaccgccgccttcggcctgggcctg
ctgcaggccatcgatcccagcctgatccgcgtgcaggcgctggtgctgtgcccaacccgc
gagctggccgaccaggtcgccaagcagatccgcaagctggccaccggcatccccaacctg
aagctgctgctgctggtcggtggcgtgccactcggcccccagttggcctcgctagaaggc
cacgatccgcacgtggtggtcggcacccccggccgcgtgcaggaactggcccgcaagcgc
gccctgaacctgggcgcggtgcgcaccctggtgctggatgaagccgaccgcatgctggac
atgggctttgaagagccgatccgcgagattgccggccgtacccacaaggaccggcagagc
ctgctgttctcggccaccttccctgacagcatccgccagatcgcccgcgacctgctgcgc
gatgcgctggaagtgaccgtagaaggcgccgaccaggccccggccatccgccacctgttc
tgcgaagtggagccggcgcaccggcagaaggcgctggccggcctgctgctgaagtacacg
ccggaatcggcggtggtgttctgcaacacccgcaaggacgtggacgaggtcgccaactcg
ctgcagcagttcggcttctcggcgctggccctgcatggcgacatggagcagcgtgaccgc
gaggaagtgctgctccgcctggccaaccgcagctgcaacgtgctggtggccagcgacgtg
gccgcgcgcgggctggatgtggaagagctggcggcggtgatcaactacgagctgcccacc
gacgtggagagctaccagcaccgcgtgggccgtaccggccgtgccggtgccagcggcctg
gcgatcagcctggtggccggtcgtgaaaagacccgcgccgaggccgtcgaagcccatctg
ggccagccgctggactggcagaagacgccgctggcgacgtcgcgcccggcccagctgccg
caggcggccatgcgcaccctgcgcatcgatggtggcaagaccgacaagctgcgcccgggc
gacatcctcggcgcgctcaccggcgatgccggcctgtcgggcaagcacatcggcaagatc
gcgatcttcccgacccgctcctacgtggccattgcccgtgagcaggtcaacagggcggtc
gcgaagctggaagccggcaagatcaagggccgtcgcttccgcgtgcggatgatgtga
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