Stenotrophomonas cyclobalanopsidis: AB1723_14670
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Entry
AB1723_14670 CDS
T10607
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03420
Nucleotide excision repair
scyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB1723_14670 (uvrD)
03430 Mismatch repair
AB1723_14670 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyc03400
]
AB1723_14670 (uvrD)
Enzymes [BR:
scyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB1723_14670 (uvrD)
DNA repair and recombination proteins [BR:
scyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB1723_14670 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AB1723_14670 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
XCZ86758
LinkDB
All DBs
Position
complement(3201516..3203708)
Genome browser
AA seq
730 aa
AA seq
DB search
MDVSHLLDGLNPAQREAVSAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVEGVPTHGIFAV
TFTNKAAGEMRHRIDAQLPNGSRGAWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQL
RLVKRVVQALDIDDSKHPPKQIAWWINEQKDEGRRPQHIQPEPHDAWLETMRQAYTEYQA
RCDRAGLVDFAELLLRAHELLRDNPPLLAHYRARFREILVDEFQDTNAIQYAFVRVLAGH
EGHVFVVGDDDQAIYGWRGAKVENVQGFLRDFPGAQTIRLEQNYRSTANILGAANAVIAH
NPDRIGKELWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGGSYTEVAVLYRSNAQ
SRALEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRGIG
ERTLDEVRREARAQGISLWEATMLVTQGTALAARARNALAGFLVLVNELQAQTLHMTLAE
RVDHVLSRSQLREHWSKESRNSLDSESRTDNLDELVSVASRFLRRADDIEEVGEDMDELV
AFLAYAALEAGEGQAQAGEEGVQLMTLHSAKGLEFPLVFLAGMEDGLFPSARSLEESGRL
EEERRLAYVGITRARQKLVLCYAESRRIHGQDNYSLPSRFLREIPRELLHEVRPKVQVSR
PASLGSSRVMGHASIEAPPLKLGALVTHPKFGEGMVTDYEGSGAHARVQVEFADAGSKWL
VMAYANLTVI
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcccacctgctcgatggcctgaacccggcccagcgcgaagccgtctccgct
ccccccggccaccacctggtgctggccggtgccggttccggcaagacccgcgttctcacc
caccgcatcgcctggctgcatgaagtcgaaggcgtgccgacccacggcatttttgcggtg
accttcaccaacaaggctgccggcgagatgcgccaccgcatcgacgcgcagcttcccaac
ggcagccgcggcgcgtggatcggtaccttccacggcctggccaaccgcctgctgcgcctg
cactggcaggacgccaagctgcctgaaggcttccaggtcatggattcggacgaccagctg
cggctggtcaagcgcgtggtccaggcgctggacatcgacgacagcaagcatccgcccaag
cagatcgcctggtggatcaacgaacagaaggatgagggccgccgcccgcagcacatccag
cccgagccgcatgatgcgtggctggaaaccatgcgccaggcctacaccgaataccaggcg
cgctgcgaccgcgccggcctggtcgacttcgccgagctgctgctgcgcgcgcacgaactg
ctgcgcgacaacccgccgctgctggcgcattaccgcgcgcgtttccgcgaaatcctggtg
gacgagttccaggataccaacgccatccagtacgccttcgtgcgcgtgctggccggtcac
gaaggccatgtgttcgtggtcggtgacgatgaccaggccatctacggctggcgcggcgcc
aaggtcgagaacgtgcagggcttcctgcgtgattttcccggcgcgcagaccatccgcctg
gagcagaactaccgttccaccgccaacatcctcggcgcggccaatgcggtcatcgcgcac
aacccggaccgcatcggcaaggaactgtggaccgacagcggcgacggcgaaccgatcgac
ctatatgcggcctacaacgagatggacgaggcgcgttacatcgtcgagcgcgcgcggcag
tgggtgcgcgatggtggcagctacaccgaagtggccgtgctctaccgcagcaacgcgcag
tcgcgcgcgctggaagaggcgctgctgagcgaacaggtgccgtaccgcgtgtatggcggc
atgcgcttcttcgagcgtgctgaaatcaaggacgcgctggcctacctgcgcctactgtcc
aaccgcaatgacgatgccgccttcgagcgtgcggtgaacacgccgacccgtggcatcggc
gagcgcaccctggatgaggtgcgtcgcgaggcgcgcgcacagggcatctcgctgtgggag
gccaccatgctggtcacccagggcacggccctggccgcgcgtgcacgcaatgcgctggcc
ggcttcctggtgctggtgaacgaactgcaggcgcagaccctgcacatgaccctcgccgag
cgcgtggaccatgtgctgtcgcgctcgcagctgcgcgagcactggagcaaggaaagccgc
aattcgctggattcggaatcgcgtaccgacaacctcgacgaactggtttcggtggcctcg
cgcttcctgcgccgtgccgatgacatcgaggaagtgggcgaggacatggacgagctggtc
gcgtttctggcctatgccgcgctggaggccggtgagggccaggcgcaggcgggcgaggaa
ggcgtgcagctgatgaccctgcactcggccaagggtctggagttcccgctggtgttcctg
gccggcatggaagacggcctgttcccgagcgcgcgttcgctggaagaaagcggccgcctg
gaagaagagcgccggctggcctacgtgggcatcacccgcgcgcggcagaagctggtgctg
tgctacgccgaatcgcgccgtatccacggccaggacaactacagcctgccgtcgcgcttc
ctgcgcgagatcccgcgcgagctgctgcacgaagtgcggccgaaggtgcaggtctcgcgg
ccggcatcgctgggcagcagccgggtgatgggccacgcctcgatcgaggcaccgccgctg
aagctgggggcgctggtgacccatcccaagttcggcgaaggcatggtgaccgactacgaa
ggcagcggcgcccacgcccgcgtgcaggtcgagttcgccgatgccggcagcaagtggctg
gtgatggcctacgccaacctgacggtgatctga
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