Stenotrophomonas cyclobalanopsidis: AB1723_15045
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Entry
AB1723_15045 CDS
T10607
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AB1723_15045 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyc03400
]
AB1723_15045 (recB)
Enzymes [BR:
scyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AB1723_15045 (recB)
DNA repair and recombination proteins [BR:
scyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AB1723_15045 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_25
nSTAND_NTPase5
AAA_11
Motif
Other DBs
NCBI-ProteinID:
XCZ86817
LinkDB
All DBs
Position
complement(3295633..3299271)
Genome browser
AA seq
1212 aa
AA seq
DB search
MSIPVDPYLLLPLQGIGLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDAATQ
ELRKRIRERLALAARLVDLPPADDEAPDTLLTRQVLQRHLDESGESAAALKRRLQVAADE
IDLASIFTIHGFCTRVLREYALESGHTFDPPELLASDRELLDELAADLWRVHANDPATLE
PLLWLWSNPDALASDLRALLASPPLYPRPQPVALEDPRPALQAAAADLSMAVREHGEQFF
LDLCEAVDNKWINGVSYKLGWLHPLGRQLLAWAARGDAGELLGSDRLPALLADALVAKTN
KKFADRTPSSPLQAPLERYVALLAQREQWLRAASLNLLHSLREEATQRLAMLKRTRRVQT
YDDLIDGVAQALEGSQRLELVRKLRLQYRIALVDEFQDTDDRQWGIFHTVFGDSPEVREL
GLPPALFLIGDPKQAIYGFRGGDIHTYLKAKQAARPAPPLDQNFRSRPSVLRALQALYDN
AGDDAFLEAGIGFEPVRPGGVRTDEDYLRDGAAAPALTLRVLRSEGDKAMSADASRAAAT
QACVAAIHQTLLDARAGMAVLRGRPVQPGDIAVLVRSHREATLVQRALAAVGIPAVAAGK
QSLFSTSEARDLRALLLALLQPADEGRLRAALATVLLGQRASAIANMEREGDLQRAFQAQ
LLHWRERWQRGGPFAVVADVCAAQGERLLALIDGERRLTNYLQLGELLQEASAQALGMHG
LLDWLQAQMANADQNDEQQLLRLESDARRVQIITLHKSKGLEYPLVYLPFVGIDGGAPNN
AAHCTVHVDGERQLHWKLDKDEAWEAASGQRDREQRAEDARLLYVGLTRAEHALWIAIGD
LAGLGKTRLAPLLGDLQALYAHTDVHIDDSEPALQLPQLPVEQEGELPAVRSLTRRVPHD
WWVYSFTQLAHADAGDDVEAAATELPAPAADEPAGAELPLEPALPEPAAADAAPLDPRFM
GSRFGNVLHEALENVDFAAWSGWTADQPAPEGQADLLRKALHDEGYADEDLDDGVAVLVP
LVGHTLTVALPEGGALHGLGEGQRRAEIEFHFAIEPTAVPALLQLLHAHGISSARRGFGL
RRRLEGLMTGKIDLTYVRDGRWYVLDYKSNRLPGYSPDLLQIAMRHSEYDLQALIYTVAL
HRWLRFRLGRAYDYARDMGGIRYLFCRGLDGNGNGVHVDRFAAELVDGLDALFAGGDAAH
ADLVARALGASA
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccccgtggatccctacctgctgctgccgctgcagggcatcggcctgatcgaa
gccagcgccggtaccggcaagaccttcaccctggccacgctgttcacccgcctggtggtg
gaacagggcctgcgcatcggccagatcctggcggtgaccttcaccgatgccgctacccag
gagctgcgcaagcgcatccgcgagcgcctggccctggctgcgcgcctggtggacctgccg
ccggccgacgacgaggcgccggatacgctgctgacccggcaggtgctgcagcgccacctc
gacgaaagtggcgaaagcgctgccgcgctgaagcgccgcctgcaggtggccgccgacgag
atcgacctggcctcgatcttcaccatccatggcttctgcacccgcgtgctgcgcgaatat
gcgctggaaagcgggcacactttcgatccgccggagcttctggccagtgaccgtgagctg
ctggacgaactggctgccgacctgtggcgcgtgcacgccaacgacccggccacgctggag
ccactgctctggctgtggtcgaaccccgatgcgttggcctcggacctgcgcgcgctgctg
gcctcgccgccgttgtacccgcgcccgcagccagtggcgttggaggatccgcgcccggcg
ctgcaggccgccgcggcggacctgtcgatggccgtgcgcgagcacggcgagcagttcttc
cttgatctgtgcgaggccgtcgacaacaagtggatcaacggcgtttcctacaagctgggc
tggctgcatccgctgggccggcagctgctggcctgggccgcgcgcggtgacgccggcgag
ctgctgggcagcgaccgcctgccggcgctgctggccgatgcgctggtggccaagaccaac
aagaagttcgctgaccgcacgccatcctcgccgctgcaggcgccgctggaacgctacgtg
gcgctgctggcccagcgcgagcagtggctgcgcgctgcgtcgctgaacttgctgcacagc
ctgcgcgaagaagccacgcagcggctggccatgctcaagcgcacgcgccgcgtgcagacc
tacgacgatctgattgacggcgtggcgcaggcgctggagggttcgcagcggctggagctg
gtgcgcaagctgcgcctgcagtaccgcatcgccctggtcgatgagttccaggacaccgac
gatcgccagtggggcatcttccacacggtgttcggcgattcgccggaggtgcgggaactg
gggctgccaccggcgctgttcctgatcggcgacccgaaacaggcgatctacggcttccgt
ggcggtgacatccacacctatctgaaggccaagcaggccgcgcggccggccccgccgctg
gaccagaacttccgttcgcggccctcggtactgcgcgcgctgcaggccctgtacgacaac
gctggcgacgacgccttcctggaagccggcatcggcttcgagccggtccgccccggtggc
gtgcgtacggatgaagactatcttcgcgacggtgccgcggccccggcgctgaccctgcgc
gtgctgcgcagcgagggcgacaaggcgatgagtgccgacgcctcgcgtgccgccgcgacc
caggcctgcgtggccgccatccaccagacgctgctcgatgcccgtgccggtatggccgtc
ctgcgcggccgcccggtgcagcccggtgacatcgccgtgctggtgcgctcgcaccgcgag
gcgacgctggtgcagcgcgcgctggcggcggtgggcattccggcggtggcggcgggcaag
cagagcctgttctccaccagtgaggcacgcgacctgcgcgcgctgctgctggccctgctg
caaccggctgacgaaggtcgcctgcgtgcggcgctggcgacggtgctgctcggccagcgg
gccagtgcgatcgccaacatggaacgcgagggtgacctgcagcgcgcgttccaggcgcag
ctgctgcactggcgcgagcgctggcagcgcggtggcccgttcgcggtggtggccgatgtc
tgcgccgcacagggcgaacgcctgctggcgctgatcgatggcgagcgccgcctgaccaac
tacctgcagctgggcgaactgctgcaggaagcctccgcgcaggcgctgggcatgcatggg
ctgctggactggctgcaggcgcagatggccaatgccgaccagaacgacgagcagcagctg
ctgcgcctggaatcggacgcgcgccgtgtgcagatcatcaccctgcacaagagcaagggc
ctggaataccccctggtctacctgccgttcgtcggcatcgacggtggcgcaccgaacaac
gccgcgcactgtaccgtgcacgtggacggcgaacgccagctgcactggaagctggacaag
gacgaggcgtgggaagcggccagcggccagcgcgaccgcgagcagcgcgccgaggatgcg
cgcctgctgtacgtgggcctgacccgcgccgagcatgcgctgtggatcgccatcggcgat
ctcgccgggctcggcaagacccgcctggcgccgctgctgggcgacctgcaggcgctgtac
gcgcacaccgatgtgcacatcgacgacagcgagccggcgctgcagctgccgcagctgccg
gtggaacaggagggcgaactgccagccgtgcgcagcctgacccggcgtgtaccgcacgac
tggtgggtctacagcttcacgcagctggcgcatgccgatgccggtgacgacgtcgaagcg
gcggcgaccgaactgccggcaccggccgccgacgaaccggcgggtgcggaactgccgctg
gaaccggccctgcccgaacccgcagctgccgacgccgcacccttggacccgcgtttcatg
ggcagccgcttcggcaacgtcctgcacgaggcgctggaaaacgttgatttcgccgcctgg
agcggatggacagccgaccagcccgcgcccgaagggcaggccgacctgctgcgcaaggcg
ctgcacgacgaaggctatgccgacgaggacctggacgatggcgtggcggtgctggtgccg
ctggtcggtcacacgctcacggtcgcgctgcccgagggcggtgccctgcacggcctcggc
gagggacagcgccgtgctgaaatcgaattccacttcgccatcgaaccgaccgccgtgccc
gcgctgctgcagctgctgcacgcgcacggcatttccagcgcgcgccgtggctttggcctg
cgccgccggctggaagggctgatgaccggcaagatcgacctcacctacgtgcgcgatggg
cgctggtacgtgctcgactacaaatccaaccggttgccgggctacagcccggacctgctg
cagatcgccatgcgccacagcgaatacgacctgcaggcgctgatctacaccgtggccctg
caccgttggctgcgcttccgcctgggccgcgcctacgactacgcgcgcgacatgggcggc
atccgctacctgttctgccgtggcctggatggcaacggcaatggcgtgcacgtggaccgc
ttcgcagcggaactggtggatggactggacgcgctgtttgccggcggcgacgccgcccac
gccgacttggtcgcgcgtgcccttggagccagcgcatga
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