Stenotrophomonas cyclobalanopsidis: AB1723_15810
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Entry
AB1723_15810 CDS
T10607
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyc03032
]
AB1723_15810
03400 DNA repair and recombination proteins [BR:
scyc03400
]
AB1723_15810
Enzymes [BR:
scyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AB1723_15810
DNA replication proteins [BR:
scyc03032
]
Prokaryotic type
DNA Topoisomerases
AB1723_15810
DNA repair and recombination proteins [BR:
scyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AB1723_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
PRK
Motif
Other DBs
NCBI-ProteinID:
XCZ86960
LinkDB
All DBs
Position
3487372..3488436
Genome browser
AA seq
354 aa
AA seq
DB search
MPTPPTPEQQAARAAGLRYVDDTQPGISRRRAGKGFAYRDADGHAVRDAATLQRIRALAI
PPAYNAVWICAHANGHLQATGRDARGRKQYRYHAEWAAMRDSGKFDRTIAFGEALPALRR
RLSRDLKQRGYPREKVLAVVVALLADTLVRVGNETYAKENKSYGLTTLRNRHLDLLRGGR
VRMRFRGKSGQLHEVTVGDRRLGALVRGVQQLPGQALFQYRDDDGVVQPVDSGAVNDYLR
EVMGEDFTAKDFRTWGGTLAAVQTFAATELPEPSSQRALAKAQREVVCQVAARLGNTPAV
CRKAYIDPCVFAGWERGELTALAGLRGPRQWEQATLKVLRRARRLAKRSGATAP
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgcccacaccccccacccccgaacaacaggccgcacgcgcggcgggcctgcgctatgtc
gatgacacccagcccggcatcagccggcgccgcgcaggcaagggttttgcctaccgcgat
gctgatggccatgctgtgcgcgatgccgccaccctgcagcgcatccgcgcgctggccatc
ccgccggcctacaacgccgtgtggatctgcgcacacgccaacggccacctgcaggccacc
ggccgcgatgcgcgtgggcgcaagcagtaccgctatcacgccgagtgggcggcaatgcgt
gattcgggaaaattcgaccgcaccatcgccttcggcgaagcgctgcctgccctgcgccgc
aggctcagccgcgacctcaagcagcgtggttacccgcgcgagaaggtgctggcggtggtg
gtcgcgctgctggccgacaccctggtgcgggtgggtaatgaaacctatgccaaggaaaac
aagtcctacggcctgaccacgctgcgcaatcgtcacctcgacctgctgcgcgggggccgt
gtgcgcatgcgcttccgtggcaagtcggggcagctgcatgaggtgaccgttggtgaccgc
cgcctgggcgccctggtgcgcggggtgcagcagctgccagggcaggcgctgttccagtac
cgcgacgacgacggtgtcgtgcagccggtcgattccggtgcggtcaacgactacctgcgc
gaggtgatgggcgaggacttcaccgccaaggatttccgtacctggggcggtaccctggcg
gcggtgcagaccttcgccgccaccgagctgccggagccgtccagccagcgtgcgctggcc
aaggcgcagcgcgaggtggtgtgccaggtagccgcgcggctgggcaatacgcctgcggtc
tgccgcaaggcctatatcgacccgtgtgtgtttgccggctgggagcgtggcgaacttacc
gcgctggccggcctgcgcggcccacggcagtgggagcaggccacgctgaaggtgctgcgc
cgggcgcggcggttggccaagcgcagcggggcgacggccccgtag
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