Stenotrophomonas cyclobalanopsidis: AB1723_17945
Help
Entry
AB1723_17945 CDS
T10607
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB1723_17945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyc03019
]
AB1723_17945
Enzymes [BR:
scyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB1723_17945
Messenger RNA biogenesis [BR:
scyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB1723_17945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
XCZ87350
LinkDB
All DBs
Position
complement(3940558..3941982)
Genome browser
AA seq
474 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL
DILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGSRKRDLLLH
LLAQDSREQTLVFARTKHGSDKLASFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTV
LVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLR
AITRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAH
AGPKKAGGGRREGGGNGQQRAGAGAGQGQRRGGGGNGGGGRGRGQGGNVGGRAG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctaggccttgcgcctttcctgctgcgcgcgcttgccgagcagggc
tacgaaaacccgaccccgatccagcagcaggcgatcccgctggcgctggccggtcgcgac
ctgctggccggcgcacagaccggtaccggcaagaccgccgccttcggcctgccgctgctg
cagcacctgggcaccgcttcgcaggaagtgcgcagcggcccgcgcaagccgcgcgcgctg
atcctggccccgacccgcgaactggccacgcaggtgcatgacagcctgcgcggctacagc
aagtacctgcgcatccccagcgcctgcatctatggcggcgtcggcatgggcaaccagctg
gacatcctgcgccgcggcgtcgacctgctggtcgcctgcccgggccgcctgatcgaccac
ctggagcgtcgcagcgtcgatctgtccggcatcgaagtgctgatcctggacgaagccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctcgccaagctgccgaag
cagaaccgccagaccctgctgttctcggccaccttcgaggacaacatccgccagctcgcg
ctggagttcatgcgcaacccggaacagatccaggtgacgccgaagaacaccgtggccgaa
accatcacccaccgcgtgcacccggtcgatggcagccgcaagcgtgacctgctgctgcac
ctgctggcgcaggacagccgcgagcagaccctggtcttcgcgcgcaccaagcacggcagc
gacaagctggcctcgttcctggaaaagtctggcatcaagaccgcggccatccacggcaac
aagagccagggccagcgcctgcgtgcactgggtgacttcaaggccggtcgggtgaccgtg
ctggtggccaccgacatcgccgcacgcggcatcgacatcaacgagctgccgaaggtgatc
aacttcgacctgccgatggtggccgaggattacgtgcaccgcatcggccgtaccggtcgc
aacggtgcgaccggccaggcgatttcgctggtggcgcaggatgaagtgaagctgctgcgc
gcgatcacccgcctgctgggccgcgacatggatatccgcgacgtgccgggcttcgagctg
cagacgccgatccgttggggcaacagtgcaccgggcaaggccgagcacgataccggcgag
cgcgcaccgcgcaagagccacgcgcgtcgcccgcacggcgatgcaccgcgccatgcacac
gcaggcccgaagaaggccggcggtggccgtcgcgaaggcggtggcaatggccagcagcgt
gccggtgcgggcgcgggtcagggccagcgtcgtggcggtggcggcaatggtggtggtggc
cgtgggcgcggccagggcggcaacgtcggcggtcgcgccggctga
DBGET
integrated database retrieval system
