Stenotrophomonas cyclobalanopsidis: AB1723_17960
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Entry
AB1723_17960 CDS
T10607
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
scyc Stenotrophomonas cyclobalanopsidis
Pathway
scyc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB1723_17960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyc03400
]
AB1723_17960
Enzymes [BR:
scyc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
AB1723_17960
DNA repair and recombination proteins [BR:
scyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AB1723_17960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
DUF2026
Motif
Other DBs
NCBI-ProteinID:
XCZ87353
LinkDB
All DBs
Position
complement(3944642..3946141)
Genome browser
AA seq
499 aa
AA seq
DB search
MPRPPPDAQRWSLRVDPPWSLDAWRDAAREALVRGVAPAQLDWLEGSEASLLDAPSVQGA
PLPDDASAPSVPRDFMELAATCLCHREPQRLALLYRLLWRIAHGERSVLSNPADADVLRA
MALAQAVRRDTHKMKAFVRFREVPGQTDAFIAWFEPDHHIVERVAPFFARRFAGMRWAIL
TPGRSVYWDGQALAFGPGARREDAPAEDARESLWQTYYASIFNPARLNTRMMLQEMPARY
WRHLPEAQLLPGLVRDAADRVQEMHDRPAQAPQRKIPQRPAVLPSPVSSADSLDALRAQA
AGCRQCPLWEPATQVVFGQGPADARVMVIGEQPGDTEDLCGRPFAGPAGQLLDRALAELG
IDRATLYLTNAVKHFHHERRGKVRLHKRPESRHVRACQPWLLGEIARVRPQVIVCLGATA
ASSVFGAGFQLSRDRGRWHTLEDGTRGYATVHPAWVLRQGDDARREEAYRLFRDDLARLR
ADDAESAGRGPALQPTPDR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcccgccgcctgacgcgcagcgctggtcgctgcgggtggacccgccgtggtcg
ctggacgcctggcgcgatgccgcccgcgaggcgctggtgcgtggcgtggcaccggcgcag
ctggactggctggaaggcagcgaggcctcgctgctggatgcgccatcggtgcagggggct
cccctgcccgacgacgccagcgcgcccagcgtgccgcgcgatttcatggagctggccgca
acctgcctgtgccatcgcgagccgcagcgcctggccctgctgtaccggctgctgtggcgc
atcgcccacggcgagcgcagcgtgctgtccaacccggccgatgcggacgtgctgcgggcg
atggcactggcccaggcggtgcgccgcgacacccacaagatgaaagccttcgtgcgcttc
cgcgaagtgcccgggcagaccgatgccttcatcgcttggttcgagccggaccatcacatc
gtcgaacgcgtcgcgccattcttcgcgcgccgcttcgccggcatgcgctgggccatcctc
acccccggccgcagcgtgtactgggatggccaggcgctggccttcgggcccggcgcccgt
cgcgaagatgccccggccgaggatgcgcgcgaatcgctgtggcagacctactacgccagc
atcttcaacccggcccgcttgaacacccggatgatgctgcaggagatgccggcgcggtac
tggcgccacctgcccgaagcgcagctgctgccggggctggtgcgcgatgcggccgaccgc
gtgcaggaaatgcacgaccgtcccgcacaggccccgcagcggaagattccgcagcgaccg
gcggtgctgccatcaccggtatcaagcgcggacagcctcgatgcgctgcgtgcccaagcc
gccggctgcaggcagtgcccgttgtgggagccggccacccaggtggtgttcgggcaaggg
ccggccgatgcacgggtaatggtgatcggcgaacaacccggcgataccgaggatctctgc
ggccgcccattcgccggtccagcaggccagctgctggaccgggccctggccgaactcggc
atcgaccgcgccacgctgtacctgaccaatgcggtgaagcacttccaccacgagcggcgc
ggcaaggtgcgcctgcacaagcgccccgagagccggcatgtgcgggcctgccagccgtgg
ctgctgggcgagatcgcgcgggtgcggccgcaggtgatcgtctgcctgggcgcgaccgcc
gcttcctcggtgttcggcgcgggcttccagctgtcacgcgaccgcggacgctggcacacg
ctggaagacggcacccgtggctatgccaccgtgcacccggcgtgggtgctgcggcaaggc
gacgacgcccggcgtgaggaggcctaccggctgttccgcgatgacctggcccgtttgcgg
gcggacgacgcggaatccgccgggcgtggcccggcgctgcaaccgacgcccgaccggtag
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