Streptomyces cyaneofuscatus: R2B67_07680
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Entry
R2B67_07680 CDS
T09646
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scye
Streptomyces cyaneofuscatus
Pathway
scye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2B67_07680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scye03019
]
R2B67_07680
Messenger RNA biogenesis [BR:
scye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R2B67_07680
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WOP08446
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Position
complement(1871005..1872690)
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AA seq
561 aa
AA seq
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MSHPHPELGTPPKLPKGALRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDIEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVTEGQRERIGVFDCEFIAVNHSIPDALAVAIRTPAGMAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKALDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
HIVIAEDGVVVDLIDGKAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFI
VVDSSSGKIVGGPHIQARGSGIDDSAFTGVTPKIQEALDKSAQDGVMEPHQLQQMVRRVV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccatccgcaccctgaactcggcacccccccgaagctcccgaagggcgccctgcgg
gtcaccccgctcggcggcctgggcgagatcggccgcaacatgacggtcttcgagtacggc
ggccgcctgctcatcgtcgactgcggcgtcctcttccccgaggaggagcagccgggcatc
gacctgatcctgccggacttcaccacgatccgggaccgcctggacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgtgccctacctcctgcgcctgaag
ccggacatccccctcatcggctcgaagctgaccctcgcgctcatcgaggcgaagctccag
gagcaccgcatccgcccgtacaccctcgaagtcaccgagggccagcgcgagcgcatcggc
gtcttcgactgcgagttcatcgcggtcaaccactcgatcccggacgccctcgcggtcgcc
atccgcacccccgcgggcatggccgtggccaccggtgacttcaagatggaccagctcccg
ctggacggccgtctcaccgacctgcacgcgttcgcgcgtctcagcgaggagggcatcgac
ctcctcctctcggactccacgaacgccgaggtccccggcttcgtaccgcccgagcgggac
atctccaacgtcctgcgcacggtcttcgccaacgcgcagaagcgcatcatcgtggcgagc
ttcgccagccacgtgcaccgcatccagcagatcctggacgccgcccacgagtacggccgc
agggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgtgacctcgga
tacctgaaggtccccgcgggcctggtcgtcgacgtgaaggccctcgacgacctgccggac
gacgaggtcgtgctggtctgcacgggctcgcagggcgagccgatggccgccctctcccgg
atggccaaccgcgaccaccagatccggatcgtccccggcgacacggtgatcctggcgtcg
tccctcatccccggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gagtggcgccacctgcgggccaacgccgagctgggagccctcacgggcgtgcccaaggac
cacatcgtcatcgccgaggacggcgtggtcgtcgacctgatcgacggcaaggcgaagatc
gtcggcaaggtccaggccggttacgtgtacgtcgacggcctctccgtcggcgacgtcacc
gagacctccctcaaggaccgccgcatcctcggcgacgagggcatcatctcggtcttcatc
gtggtcgacagctcctccggcaagatcgtgggcggcccccacatccaggcccggggctcc
ggcatcgacgacagcgcgttcaccggggtcaccccgaagatccaggaagccctggacaag
tcggcccaggacggcgtcatggagccccaccagctccagcagatggtccgccgcgtcgtc
ggcaagtgggtctccgacacctaccgccggcgcccgatgatcctcccggtcgtcgtcgag
gtctga
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