Streptomyces cyaneofuscatus: R2B67_09905
Help
Entry
R2B67_09905 CDS
T09646
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scye
Streptomyces cyaneofuscatus
Pathway
scye03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R2B67_09905 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scye03400
]
R2B67_09905 (ligD)
Enzymes [BR:
scye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R2B67_09905 (ligD)
DNA repair and recombination proteins [BR:
scye03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R2B67_09905 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WOP08855
LinkDB
All DBs
Position
2390918..2391817
Genome browser
AA seq
299 aa
AA seq
DB search
MTPITEVEGRRLSLSNLDKVLYPATGTTKGEVLLYYAATAAGAILPHLRDRPVSFLRYPD
GPGGQLFFTKNPPPGTPDWVRTTPVPRSEDPAARQVMVQDLPALMWAANLVVEFHTPQWC
AAAPETADRMVFDLDPGSPATVVECCAVALWLRERLAADGLFAYGKTSGSKGLHLLVPLE
PAPSAEVSAYAKRLAVEAESALPGLALHRMKRALRPGKVFVDFSQNAASKTTATPYTLRA
RPEPTVSAPVTWDEIEGCREPEALVFRAQDMAGRLERYGDLLGPLLDPERARPLPAGSP
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacggaggtggaggggcggcgcctctcgctcagcaacctcgacaaggtg
ctgtatccggccaccgggaccaccaagggcgaggtgctcctctactacgcggccaccgcg
gcgggcgcgatcctgccccatctccgcgaccgcccggtctccttcctgcgctatcccgac
gggcccggggggcagctcttcttcaccaagaatccgccgcccggtacgcccgactgggtg
cgcaccacccccgtgccgcggagcgaggaccccgccgcccgccaggtgatggtccaggat
cttcccgcgctgatgtgggcggccaatctggtggtggagttccacaccccgcagtggtgc
gccgcggccccggagaccgccgaccggatggtcttcgacctggaccccggctcccccgcg
acggtcgtggagtgctgcgcggtggccctctggctgcgggagcggctcgccgccgacggg
ctgttcgcgtacgggaagacgtccggctccaaggggctgcatctgctggtcccgctggag
cccgccccgtccgccgaggtgtccgcgtacgccaagcggctcgcggtggaggcggagagc
gccctgccggggctggccctgcaccggatgaagcgcgctctgcggcccgggaaggtcttc
gtcgacttcagccagaatgcggcgtcgaagaccaccgccaccccctacaccctgcgggcc
aggcccgagcccaccgtctccgcgccggtcacctgggacgagatcgaggggtgccgggag
ccggaggcgctggtgttccgggctcaggacatggccgggcggctggagcggtacggggat
ctgctcgggcccctgctcgacccggaacgggcgcgaccgcttccggcgggctccccctga
DBGET
integrated database retrieval system
