Streptomyces cyaneofuscatus: R2B67_25275
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Entry
R2B67_25275 CDS
T09646
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scye
Streptomyces cyaneofuscatus
Pathway
scye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2B67_25275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scye03019
]
R2B67_25275
03009 Ribosome biogenesis [BR:
scye03009
]
R2B67_25275
Enzymes [BR:
scye01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R2B67_25275
Messenger RNA biogenesis [BR:
scye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R2B67_25275
Ribosome biogenesis [BR:
scye03009
]
Prokaryotic type
rRNA processing factors
R2B67_25275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WOP11642
LinkDB
All DBs
Position
5772291..5776559
Genome browser
AA seq
1422 aa
AA seq
DB search
MPQPNEPATNGNNEENTPGDKLPPRRRRRAASRPAGPPGAVQAPAAEETAPAAVVETPAT
APEETAPESAAEAAPPARTRRRAVRKATAPAGAPETAEVVAETVETPAPVAEAPAQAAET
AEEAPAPRTRRRAVRKATAPAGAPQAAEVVEVVETPAEPLVAEPEEDEEPVAEAVEPEAA
PEPPAPRRRRASRKATAPAGAPQAAEAAVVVEPAAPAAPVAEPAAEAAAPVEPAAPAAEA
PRGRTRRRASAPAGTPQAAAATDAAAPALEPVPAAAEAAEPAEEAPAPRSRRRASRKATA
PAGAPQVTEVAEPVAEESVEAVEAAESLPAAVAEELAAEAEEVEEAAPRGRQRRRATAAA
GRPEFTTKAEEPTRKGRRATRPAVAVFQAPVFAEPMFQTPETAAAAAAAGSSSPYDEVDE
AEERTAEVAQAPAPAEAAPQGGSRRRRRRRGEAAEQPEQTAAPVEAPAEQPAEEAPEAEA
DEHEGEDTDEYGDRPSRRRRRGGRRRRRGEASDTDEAEQHADEAPAPSRSEDDQAPAQVQ
EADEEEDDDNDSAASGSSSSRRRRRRRRRSGEGGSEADNGTDDPERTVVKVREPRKKEER
EPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQS
GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA
GEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG
SMTGISRKLPDTERSRLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQ
KKAKGTSGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLT
ERLSRWTSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQG
GNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRT
KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGGSKKSK
KRRGGAGQDHEHGHEQDHGHEHGHDDDAAEPVETESEAELAAEVAAPVAVEPEVTADEEF
YGSPAEAEAAASRGRGRRRASRKASAPAGAPRTEAPAPVVEAEPVAEQVVEPVAEPVLDT
PEPANAPEAPVAQEAAEVAEAAPQGRTRRRATRKATAPAGSPKQAESAEPVQPAEPATDP
VAVEDPVVEVPAEAPAPVQEQAPVAEAPQEAAPPRARRRVTRKVTAPAGSPTGSQEAAVL
VVESAPEPKGAEAPEAEAAEAPASGEPDEAPVAKKTARKAAAKKAPAKKAVAKKTAAKKT
AAKKTTAKTAAKKTTKKTVAAEQSSPSVTASAPSTDGEASTG
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagccgaacgaacccgcgaccaacgggaacaacgaagagaacacccccggggac
aagctgccgccgcgccgcaggcgccgcgccgcttcccgcccggcaggcccgcccggcgcg
gtccaggcgcccgccgccgaggagaccgcaccggccgccgtcgtggagaccccggccacc
gcgcccgaggagacggcccccgagtcggccgccgaagccgcgccccccgcccgtacgcgc
cgtcgcgccgtgcgcaaggcgaccgcacccgcgggcgctccggagaccgccgaggtggtc
gccgagaccgtcgagacccctgctccggtggccgaggccccggcccaggccgccgagacc
gccgaggaggccccggcgccgcgtacccgccgccgcgcggtccgcaaggcgacggctccg
gccggtgccccgcaggccgccgaggtcgtcgaggtcgtcgagaccccggccgagccgctc
gtggcggagccggaggaggacgaggagccggtggccgaggcagtcgagcccgaggccgcc
ccggagccgcccgccccgcgccgccgtcgcgcctcccgcaaggccaccgcgcccgccggt
gccccgcaggccgccgaggccgctgtcgtggtcgagccggccgcgcccgccgcacccgtg
gccgagccggccgccgaggccgccgcgcccgtcgagcccgcggcccccgccgccgaggcc
ccgcgtggccgtacccgccgccgtgcctccgccccggccggcaccccgcaggccgccgcc
gccacggatgcggccgcgcccgccctggagccggtcccggccgccgccgaggccgccgag
cccgccgaggaggccccggcgccgcgcagccgccgtcgtgcctcccgtaaggccaccgcc
cctgccggagccccgcaggtcaccgaggtggccgagccggtcgccgaggagtcggtggag
gccgtcgaggccgccgagagcctgcccgccgccgtggccgaggagctcgccgccgaggcg
gaggaggtcgaggaggccgccccgcgcggacgccagcgccgccgggccaccgccgccgcg
ggccgccccgagttcacgaccaaggccgaggagccgacccgcaagggccgccgcgccacg
cgccccgccgtcgccgtgttccaggccccggtcttcgccgagccgatgttccagaccccg
gagacggccgccgccgctgccgcggccggttcctcctccccgtacgacgaggtcgacgag
gccgaggagcggaccgccgaggtcgcacaggcccccgcgcccgccgaggccgcgccgcag
ggcggctcgcgccgccgtcgccgccgccgtggcgaggccgccgagcagcccgagcagacc
gccgccccggtggaggcgcccgccgagcagcccgccgaggaggcccccgaggccgaggcg
gacgagcacgagggcgaggacaccgacgagtacggcgaccgcccctcgcgccgccgccgt
cgcggtggccgccgtcgccgccgtggcgaggccagcgacacggacgaggccgagcagcac
gccgacgaggcgcccgccccgtcccgctcagaggacgaccaggcgccggcccaggtccag
gaggccgacgaggaggaggacgacgacaacgactccgccgcctccggttcgagcagcagc
cggcgtcgccgccgccgtcgccgtcgcagcggtgagggcgggtccgaggccgacaacggc
acggacgacccggagcgtacggtcgtcaaggtccgcgagccccgcaagaaggaggagcgc
gagccgggcaccggcttcgacgaggtccagtccatcaagggctcgacccgtatggaggcg
aagaagcagcgccgccgcgagggccgcgagcagggccgccgccgcgtcccgatcatcacc
gaggcggagttcctcgcccgccgcgaggccgtcgagcgcgtgatggtcgtccgccagagc
ggcgagcgcacccagatcggcgtcctcgaggacaacgtgctcgtcgagcactacgtcaac
aaggagcaggccaccagctacgtcggcaacgtctacctgggcaaggtccagaacgtcctg
ccgtccatggaggccgcgttcgtcgacatcggcaagggccgcaacgccgtcctgtacgcc
ggtgaggtcaacttcgaggcgctcggcatggcccacgggccgcgccgcatcgagaccgcg
ctcaagtccggccagtcggtcctggtccaggtgaccaaggacccgatcggccacaagggc
gcccgcctcaccagccaggtctcgctgcccggccgctacctcgtctacgtgcccgagggc
tcgatgaccgggatcagccgcaagctgcccgacaccgagcgctcccgcctcaagacgatc
ctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggtgcc
agcgaggacgagctgcgccgtgacgtcgagcggctgcagcagcagtgggaggacatccag
aagaaggcgaagggcaccagcggctccaacgcgccgacgctgctctacggcgagccggac
atgaccgtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtcatcgtcagc
ggtgacgacgcgtgggagaccatccacgggtacgtctcgcacgtggcgcccgacctcacc
gagcggctctcccgctggacgtccgaggtcgacgtcttcgcgacgtaccgcatcgacgag
cagctgatgaaggcgctggaccgcaaggtctacctgcccagcggcggttcgctggtgatc
gacaagaccgaggcgatggtcgtcgtcgacgtcaacaccggcaagttcaccggccagggc
ggcaacctggaggagaccgtcaccaggaacaacctggaggcggccgaggagatcgtgcgc
cagctgcggctgcgcgacctcggcggcatcgtcgtcgtcgacttcatcgacatggtgctg
gagtccaaccgggacctcgtcctgcggcgtctgctggagtgcctgggccgcgaccgcacc
aagcaccaggtcgccgaggtcacctcgctcggcctggtccagatgacccgtaagcgggtg
ggccagggtctgctggagtccttctccgagacctgtgtccactgcaacgggcgcggtgtg
atcgtccacatggagcagccgacgtccgtcggtggcggcggcggttccaagaagtccaag
aagcgccgtggcggcgcgggccaggaccacgagcacggtcacgagcaggaccacggccac
gagcacggtcacgacgacgacgcggccgagccggtcgagaccgagtccgaggccgagctg
gccgccgaggtcgccgccccggtggcggtggagcccgaggtcaccgcggacgaggagttc
tacggcagcccggccgaggccgaggcggcggcctcgcgtggccgtggccgccgtcgggcg
tcccgcaaggcgtcggccccggccggtgccccgaggaccgaggcgcccgctccggtcgtc
gaggcggagccggtcgccgagcaggtcgtggagccggtcgccgagccggtcctcgacacg
cccgagccggcgaatgctccggaagccccggtcgcccaggaggccgccgaggtggccgag
gccgcgccccagggccgtacgcgccgtcgcgccacccgtaaggccaccgccccggcgggt
tcgccgaagcaggccgagtcggcggagcccgtacagccggccgagcccgccacggacccg
gtcgccgtcgaggacccggtcgtcgaggtgcccgccgaggccccggcccccgtccaggag
caggcccccgtggccgaggctccccaggaggccgcaccgccgcgggcccgccgccgggtg
acccgtaaggtcaccgctccggcgggttcgcccacgggctcccaggaggcggcggtcctc
gtcgtcgagtccgcgcccgagccgaagggagccgaggccccggaggccgaggccgccgag
gcccccgcgtccggtgagccggacgaggcgcccgtggcgaagaagacggcccgcaaggcc
gccgccaagaaggctccggcgaagaaggcggtggccaagaagacggccgccaagaagacc
gccgcgaagaagacgacggcgaagacggccgcgaagaagacgacgaagaagaccgtcgcc
gccgagcagtcgtcgccttccgtgaccgcctcggcgccgtccaccgacggtgaggcgtcg
accggctga
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