Streptomyces cyanogenus: S1361_14215
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Entry
S1361_14215 CDS
T07416
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scyg
Streptomyces cyanogenus
Pathway
scyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S1361_14215 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyg03019
]
S1361_14215 (rne)
03009 Ribosome biogenesis [BR:
scyg03009
]
S1361_14215 (rne)
Enzymes [BR:
scyg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
S1361_14215 (rne)
Messenger RNA biogenesis [BR:
scyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
S1361_14215 (rne)
Ribosome biogenesis [BR:
scyg03009
]
Prokaryotic type
rRNA processing factors
S1361_14215 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QTD98510
LinkDB
All DBs
Position
complement(3171492..3176129)
Genome browser
AA seq
1545 aa
AA seq
DB search
MLEPTEPTEGSELNTPSDTLPPRRRRRAASRPAGPPAAAAEAPAEVTVPAIPAADADEVA
EVTEDAETTEATEAAEVAEAEGTEEAAAPAARPRRRAARRASAPAGSPASAEAAETVVPA
ASAEEPEKTAVAEAGAVVTGEEAAPRRTRRRATRSVSAPTAAETAAAETGAAAEAAATEA
PAATGAAAPAPAAEEAAPAARPRRRAARRASAPTGSPASAEAAETVVPAAAPAPVAEAAE
AAAPAPAAETEEPAAPARPRRRAARRASAPAGSPASAEAAETVVPAASAGAPQAAEGAPA
AVAEPEQAAVAEEAPAAVEPEAAAEEAAPRRTRRRATRRVSAPAGEPAAAEAQEAPAAAA
AAVPEAAEGAPAAVAEPEQAAVAEEAPAAVEPEAAAEEAAPRRTRRRATRRVSAPVTEEA
GAAEAGRQEEAAVTTPTPEETAHTTEPAAAAQAPQAAESEAGAPRRSRRRVVRAASGFAE
PARAARPAAAEAAEADAPRRPARPAVAVFQPPVFTEPKFQTPERAAAEAAAETAEVEEPE
EYAEERVETGTRRRRRRRAAAEETRPVEAAAEEEEEAEEAPESAEDLAEGEEGDETEGAE
GFEESGSRRRRRRGGRRRRRGDAAEGESGEGMDADAEELAAEQAEQDAEDTAEQEEEDAE
EGRSEEGGASSTSSRRRRRRRRRAGDTAADAEPSADDPERTVVKVREPRKPSEPSDEVQS
IKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQNGDRTQIGVLED
GVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMA
NGPRRIEAALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPD
TERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKNGGSAPT
LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVAHVAPDLAGRLSRWTSEVDVF
ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLE
AAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLV
QMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQATANGGGGKRKKRGGRGEAPEPVHEHV
HETAAVAVETGEAVEPEVETAAEVAAEAAEPVALPAPEFAPDEELYSSVAEAEAAAGRGR
TRRRASRRASAPAGAPKAERAPRAERAPRAEKPEQAPVAEPAAEVRVPTAQDVTAEEAAA
RPVQPEPAAEALAEPVAAEDQVVPAPQAEAPAAEEAAPKGRTRRRATRKVSAPAGSPEGA
EAAVVTVAETAPAAEAPAEQPAPAAEAPAERPAEAESAAAPARPRRRAVRKATAPTAPEE
TAVVVVPSAAPEAAEAAPAEAAPQAPAGEVTAEEVAEATAPAKKAARKTTAKKTAAKKTA
AKKTAAKKTAAKKTTAKKATKTAKTAAAKSTAKKTTTVSTAADEG
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgaccgaacccaccgagggttccgaactcaacacgcccagcgacaccctg
ccgccgcgcaggcgtcgtcgtgccgcctcccgcccggcgggtccgcccgccgcggccgcg
gaggcgcccgccgaggtcaccgtgccggccataccggccgccgacgccgacgaggtcgcc
gaagtgaccgaggacgccgagaccaccgaagccacggaggccgccgaggtcgccgaggcc
gagggcaccgaagaggccgccgcgcccgccgcgcgtccgcgtcgccgtgccgcccgccgt
gcgtcggcgcccgccgggtcgccggcgtccgccgaggccgccgagaccgtggttccggcc
gcgtccgccgaagagccggagaagaccgccgtggcggaggccggcgcggtcgtcaccggc
gaggaggccgccccgcgccgcacccggcgccgggccacgcgcagcgtttccgcgccgact
gctgccgagaccgctgccgccgagaccggtgccgctgccgaggccgccgcgacggaggcg
cctgccgccacgggggccgccgctcccgcgcccgccgccgaggaggccgcgcccgccgcg
cgtccgcgtcgccgtgccgcccgccgtgcgtcggcgcccaccgggtcgccggcgtccgcc
gaggccgccgagaccgtggtcccggccgccgcgcccgctccggtggccgaagccgcggag
gccgccgctccggcgccggccgccgagaccgaagagcccgcagcccccgcgcgtccgcgc
cgccgtgccgctcgccgtgcgtcggcgcccgccgggtcgccggcgtccgccgaggccgcc
gagaccgtcgtgccggccgcgtccgccggtgcgccgcaggccgccgagggggctcccgcc
gccgttgcggagccggagcaggctgccgtggccgaggaggctccggccgctgtggagccg
gaggccgccgccgaggaggccgccccgcgtcgtacgcgccgccgggccacccgccgggtg
tccgcgcccgccggtgagcccgcggccgctgaggcccaggaggctcccgccgccgctgcg
gctgccgtgccggaggccgccgagggggctcccgccgccgttgcggagccggagcaggct
gccgtggccgaggaggctccggccgctgtggagccggaggccgccgccgaggaggccgct
ccccgtcgtacgcgccgccgtgccacccgccgggtgtccgcgcccgtcaccgaggaagcc
ggggccgccgaggccggccggcaggaggaggccgcggtgaccacccccaccccggaggag
accgcgcacaccaccgagccggccgccgccgcacaggcgccgcaggccgccgagtccgag
gcaggggccccgcgccggtcccgccgccgggtcgtccgcgccgcgtccgggttcgccgag
cccgcccgcgcggcccggcccgccgccgcggaggccgccgaggccgatgccccgcgccgc
cccgcccgccccgccgtcgccgtcttccagccgccggtcttcaccgagcccaagttccag
accccggagcgggccgctgccgaggccgctgccgagaccgccgaggtggaggagcccgag
gagtacgcggaggagcgcgtcgagaccggcacccgccggcgccggcgccgccgtgctgcc
gccgaggagacccgcccggtcgaggccgccgccgaggaagaggaggaggccgaggaggcc
cccgaatcggccgaggacctcgccgagggcgaggagggcgacgagaccgagggcgccgag
ggcttcgaggagtccggttcgcgccgccggcgccgccgtggcggacgccgtcgccggcgc
ggtgacgcggccgagggcgagtccggcgagggcatggacgccgacgccgaggagctggcc
gccgagcaggccgagcaggacgccgaggacaccgccgagcaggaggaagaggacgccgag
gagggccgctccgaggagggcggtgcttccagcaccagcagccgccggcgtcgtcgccgc
cggcgccgggccggtgacaccgccgccgacgccgagccgtccgccgacgacccggagcgc
acggtcgtcaaggtccgcgagccgcgcaagcccagcgagccgtccgacgaggtgcagtcc
atcaagggctcgacccgtctggaggccaagaagcagcgccgccgggaaggccgtgagcag
ggccgccgacgcgttccgatcatcaccgaggccgagttcctggcccggcgcgaggccgtc
gagcgcgtcatggtcgtccggcagaacggcgaccgcacgcagatcggcgtcctggaggac
ggggtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtacgtcggcaacgtc
tacctcggcaaggtgcagaacgtcctgccgtcgatggaggccgccttcatcgacatcggc
aagggccgcaacgccgtcctgtacgccggcgaggtcaacttcgaggcgctcggcatggcc
aacgggccgcggcgcatcgaggccgcgctgaagtccggccagtcggtcctcgtgcaggtc
acgaaggacccgatcgggcacaagggcgcgcgtctgaccagccaggtctccctgccgggc
cgctacctcgtgtacgtccccgagggctcgatgaccggcatcagccgcaagctgcccgac
accgagcgggcccggctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtc
atcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgcgacgtcgaaagg
ctccaggcgcagtgggaggacatccagaagaaggccaagaacggcggcagcgcgccgacg
ctgctgtacggcgagccggacatgaccgtccgggtcgtgcgcgacatcttcaacgaggac
ttctccaaggtcatcgtcagcggtgacgaagcctggcagacgatccacggctacgtcgcg
cacgtcgccccggacctggccggccggctgtcgcggtggacgagcgaggtcgacgtcttc
gccacctaccggatcgacgagcagctcgccaaggcgctggaccgcaaggtctggctgccc
agtggcggttcgctggtgatcgaccggaccgaggcgatggtcgtcatcgacgtcaacacc
ggcaagttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctggag
gcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcatcgtgatc
gacttcatcgacatggtcctggagtccaaccgggacctggtgctgcgccgcctgctggag
tgcctgggccgcgaccgtacgaagcaccaggtggccgaggtgacctcgctgggcctggtg
cagatgacccgcaagcgggtcggccagggcctgctggagtccttctccgagacctgcgtc
cactgcaacggccgcggtgtcatcgtccacctggaccaggccaccgcgaacggtggcggc
ggcaagcgcaagaagcgcggcggccggggcgaggccccggagcccgtgcacgagcacgtg
cacgagaccgccgccgtggccgtggagaccggcgaggccgtcgagcccgaggtggagacc
gccgcggaggtggccgccgaggccgccgagccggtggccctgccggcgcccgagttcgcg
ccggacgaggagctgtacagcagcgtcgccgaggcggaggcggcggccggccgtggccgt
acgcggcgccgggcgagccgccgggcgtccgctccggcgggcgcgcccaaggcggagcgt
gcgcccagggccgagcgggcccccagggccgagaagccggagcaggccccggtggccgag
ccggctgccgaggtccgggttccgaccgcccaggacgtcaccgccgaggaggcggcggcg
cgcccggtgcagccggagccggccgcggaggcgctggccgagccggtggccgccgaggac
caggtggttccggcgccgcaggccgaggcccccgccgccgaggaggccgcgcccaagggc
cgtacgcgccgtcgggccacccggaaggtgtcggccccggccggctctcccgagggcgcc
gaggcggccgtggtgacggtggcggagaccgcgcccgcggccgaggcgccggcggagcag
cccgctccggccgccgaggccccggccgagcggccggcggaggccgagagcgccgccgcc
ccggcccgtccgcgccgccgtgcggtgcgcaaggccaccgcgccgaccgcacctgaggag
acggccgtcgtggtcgtaccgtcggccgcgccggaggctgccgaggcggcaccggccgag
gcggccccgcaggccccggcgggcgaggtgacggccgaggaggtggccgaggcgaccgct
ccggccaagaaggcggcccgcaagaccaccgccaagaagaccgcggccaagaagacggcc
gccaagaagaccgcggccaagaagacggccgcgaagaagacgacggccaagaaggcgacg
aagaccgccaagacggccgccgcgaagtcgacggcgaagaagaccaccacggtctccacc
gccgccgacgagggctga
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