Streptomyces cyanogenus: S1361_34220
Help
Entry
S1361_34220 CDS
T07416
Name
(GenBank) Putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scyg
Streptomyces cyanogenus
Pathway
scyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S1361_34220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyg03019
]
S1361_34220
Messenger RNA biogenesis [BR:
scyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
S1361_34220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QTE02438
UniProt:
A0ABX7U078
LinkDB
All DBs
Position
complement(7701950..7703749)
Genome browser
AA seq
599 aa
AA seq
DB search
MFCWPGPGSPDLGKSAGAVLRRGLAMDHPVPLSGYRQGMSHPHPELKAAPPLPEGGLRVI
ALGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEETQPGVDVILPDFTSIRHRLDDIVAVVL
THGHEDHIGGVPYLLRERSDIPVVGSKLTLAFLEAKLKEHGIRPRTVRVREGDRRGFGPF
DCEFVAVNHSIPDSLAVAIRTRAGMVLHTGDFKMDQFPLDDRITDLRAFARLGEEGVDLF
LTDSTNAEVPGFTTSERELNPAIEQVMRTAPRRVIVSSFASHVHRIQQVLDAAHQHGRKV
AFVGRSMVRNMGIARDLGYLKVPSGLVVSTKELEKLPDHKIALVCTGSQGEPMAALSRMA
NRDHMIRIGKDDTVLLASSLIPGNENAIYRVINGLTRWGAHVVHKGNAKVHVSGHASAGE
LVYCYNIVKPRNVMPVHGEWRHLRANADLAIRTGVDPDRVVIAEDGVVVDLVDGRASITG
KVPAGNVYVDGMEVGGATEASLKDRLTLAAEGVVTVVAIVDADTGALAEAPDFLARGFVH
DEATFEPVIPVIEKTLATAAEEGVGDARQLEQLLARAVANWAFRTHRRKPLIIPVIIDA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgttctgctggcccgggcccgggagccctgacctggggaaatcggcaggtgctgtcctg
cggcgcggtctggcgatggatcatcctgtcccgctctccgggtaccgtcagggtatgagt
catccacaccccgaactgaaagccgccccgccccttcccgaaggagggctgcgggtcatc
gccctgggcggcctgggtgagatcggccgcaacatgaccgtcttcgagcacgcgggcaag
ctgctcatcgtcgactgtggcgtgctgttccccgaagagacgcagcccggcgtggacgtg
atcctgccggacttcacctcgatccggcaccggctggacgacatcgtggccgtggtactc
acccacggccacgaggaccacatcggcggcgtgccgtacctgctgcgcgagcggtccgac
attccggtcgtcggctccaagctgacgctggcgttcctggaggccaagctcaaggaacac
ggcatccgcccgcgcacggtgcgggtgcgggagggcgaccgccgtggcttcgggcccttc
gactgcgagttcgtggcggtcaaccactccatccccgacagcctcgcggtcgcgatccgc
acccgggccgggatggtgctgcacaccggcgacttcaagatggaccagttccctctcgac
gaccgcatcaccgatctgcgcgccttcgcccgcctcggcgaggagggcgtggacctcttc
ctcaccgactccaccaacgccgaagtacccggcttcaccacctccgagcgagagctgaac
ccagcgatcgagcaggtgatgcgcaccgcgccgcgccgggtcatcgtctccagcttcgcc
agccacgtgcaccgcatccagcaggtcctggacgccgcccaccagcacggccgcaaggtc
gccttcgtcggccggtcgatggtccgcaacatgggcatcgcccgtgacctgggctatctg
aaggtcccctccggtctggtcgtgagcacgaaggagctggagaagctcccggatcacaag
atcgctctggtgtgcaccggctcccagggcgaaccgatggccgcgctgtcacggatggcc
aaccgcgaccacatgatccgcatcggcaaggacgacaccgtcctgctcgccagctccctc
atccctggcaacgagaacgccatctaccgggtgatcaacggactcacccggtggggcgcc
cacgtggtccacaagggcaacgccaaggtgcacgtctccggacacgccagcgccggcgaa
ctcgtgtactgctacaacatcgtcaagccccgcaacgtcatgcccgtgcacggcgaatgg
cgccacctgcgggccaacgccgacctcgccattcgtaccggtgtcgaccccgaccgggtc
gtcatcgccgaggacggcgtcgtcgtcgacctggtcgacgggcgcgcatccatcaccggc
aaggtccccgccggcaacgtctacgtggacggcatggaggtcggcggcgccaccgaagca
tccctcaaggatcgcctcaccctcgccgccgaaggcgtggtcacggtggtggcgatcgtc
gacgccgacaccggcgccctcgccgaggcccccgacttcctggcccggggcttcgtccac
gacgaagccaccttcgagccggtcatccccgtcatcgagaagaccctggccaccgcagcc
gaggaaggcgtcggggacgcgcggcaactcgaacagctcctcgcccgcgccgtggcgaac
tgggcgttccgcacccaccgccgcaagcccctcatcatccccgtcatcatcgacgcctga
DBGET
integrated database retrieval system
