Streptomyces cynarae: N8I84_12605
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Entry
N8I84_12605 CDS
T09435
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scyn
Streptomyces cynarae
Brite
KEGG Orthology (KO) [BR:
scyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scyn03016
]
N8I84_12605
Enzymes [BR:
scyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N8I84_12605
Transfer RNA biogenesis [BR:
scyn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N8I84_12605
Prokaryotic type
tRNA splicing ligases
N8I84_12605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UXY19473
UniProt:
A0ABY6DZ80
LinkDB
All DBs
Position
unmamed1:complement(2699460..2700872)
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AA seq
470 aa
AA seq
DB search
MELLEEAPHRFRIERHGDMRVPGVVFASRALLSDAQQALGQVVNVATLPGIVGASYAMPD
IHWGYGFPIGGVAATDVDDGGVVSPGGVGFDISCGVRLLAADCDRAQLASAMDAVMDGLD
RAIPRGAGPGGVWRPSRAGELERVLEGGARYAVEQGHGEERDLARCEDGGAVRDADVGQV
GGRARERGLGQVGSLGSANHFLEVQQVAEVYDQAAAGAFGIARGQVTVMIHCGSRGLGHQ
ICTDHVRAMDRAMTRYGIAVPDRQLACTPVASPEGQAYLGAMAAAANYGRANRQLLTEAA
RRVFRRAADVRLSLVYDVSHNLAKLETHDVAGRRRRLCVHRKGATRAFPPGHPELPEDLR
EQGQPVLIPGTMGTASYVLAGVPGGGAFFSTCHGAGRRMSRHQAARSITGRELRARLERD
GIAARPLSWRGLTEEAPEAYKDVGEVVAASESAGLCRVVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaactcctggaagaagcaccccaccgcttccgcatcgaacgacacggcgacatgcgc
gtcccgggcgtcgtcttcgcctcccgcgccctgctcagcgacgcccagcaggcgctgggg
caggtcgtcaacgtggccacgctgcccggcatcgtcggcgcctcgtacgccatgcccgac
atccactggggctacggctttcccatcggcggggtcgcggcgaccgacgtcgacgacggg
ggcgtcgtgtcgccgggaggggtcgggttcgacatctcctgtggggtgcggttgctggcc
gccgactgtgatcgcgcccagctcgcctccgccatggacgcggtcatggacgggctcgac
cgggccatcccgcgtggcgcggggcccggtggtgtgtggcggccgagccgggccggggag
ctggagcgcgtgctggagggcggagcccgttatgccgtggagcaggggcatggtgaagaa
cgggatcttgcacggtgtgaggatgggggagcggtccgtgacgccgatgtcgggcaagtc
ggcggacgggcccgtgagcgggggctcgggcaggtgggcagcctgggatcggccaaccac
ttcctcgaggtgcagcaggtcgccgaggtgtacgaccaggcggccgccggcgccttcggg
atcgcccgcggccaggtgaccgtcatgatccactgtgggtcgcgcgggctcgggcatcag
atctgtaccgatcatgtgcgggcgatggaccgggccatgacccggtacggcatcgccgtg
cccgatcggcagctggcctgcaccccggtcgcctcgccggaggggcaggcgtatctgggt
gccatggcagccgccgccaattacgggcgcgccaaccgccagctcctcaccgaagccgcc
cgtcgggtcttccgccgcgccgccgacgtccggttgtccctcgtgtacgacgtgtcgcac
aacctcgccaagctcgagacccatgacgtggccgggcggcggcgtcggctgtgcgtgcac
cgcaagggcgccactcgggcgtttccgcccgggcatcccgagcttcccgaggaccttcgc
gagcaggggcagcccgtgttgatccccgggaccatgggaacggcctcgtacgtcctggcg
ggtgtgcccggcggaggtgccttcttctccacctgccacggtgcggggcgccggatgagc
cgccaccaggccgcccgttccatcaccggcagggagctgcgggccaggctcgagcgggac
ggtatcgccgcgcgtccgctctcctggcgcggcctgaccgaggaggcccctgaggcgtac
aaggacgtcggcgaggtcgtggcggcgagtgagagtgccggactgtgccgtgtcgtcgcc
cgcctggtgccgctcggggtggtcaagggctga
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