Streptomyces cynarae: N8I84_23070
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Entry
N8I84_23070 CDS
T09435
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scyn
Streptomyces cynarae
Brite
KEGG Orthology (KO) [BR:
scyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scyn03016
]
N8I84_23070
Enzymes [BR:
scyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N8I84_23070
Transfer RNA biogenesis [BR:
scyn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N8I84_23070
Prokaryotic type
tRNA splicing ligases
N8I84_23070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UXY21250
UniProt:
A0ABY6E3L4
LinkDB
All DBs
Position
unmamed1:5032591..5033784
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AA seq
397 aa
AA seq
DB search
MSYVEVPGAKVPIRMWADPATVEDAAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRDAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHADPVDPG
RLHGFATSGWGEFWGRFDGVAETVRFRQERAEKQMGTLGSGNHFVEMCIDTAGSVWLMLH
SGSRNIGKELAEHHIGVAQRLPHNQGLVDRDLAVFVADTPQMAAYRNDLYWAQEYAKYNR
TIMMALLKDVIRKEFKKAKPTFEPEISCHHNYVAEERYGGMDLLVTRKGAIRAGDGEYGI
IPGSMGTGSYIVKGLGNEQSFNSASHGAGRRMSRNAAKRRFTTKDLEDQTRGVECRKDSG
VVDEIPGAYKPIEKVIEQQTDLVQVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggtgccgggggcgaaggtcccgatccgcatgtgggcggacccggcg
acggtcgaggacgccgcgatgcagcagctgcggaacgtggcgaccctgccgtggatcaag
ggcctggcggtcatgccggacgtccactacggcaagggggcgacggtcggttcggtgatc
gcgatgcgggacgcggtgtgtccggctgcggtcggggtcgacatcgggtgcgggatgtcc
gccgtgaagacgtcactgacggcgaacgacctgccgggggatctgtcacgactgcgctcg
aagatcgagcaggcgatcccggtggggcgggggatgcacgccgatcccgtcgacccgggg
cgactgcacgggttcgccacctcggggtggggggagttctgggggcggttcgatggggtc
gccgaaacggtcagattccgtcaggagcgggccgagaagcagatggggacgcttggatcc
ggcaaccactttgtcgagatgtgcattgatacggccggttccgtctggctgatgctccac
tccggctcccgcaacatcggcaaggaactcgccgagcaccacatcggcgtggcccagagg
ctgccgcacaaccagggcctggtcgaccgtgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgtactgggcgcaggaatacgccaagtacaaccgc
acgatcatgatggctctcctgaaggacgtgatccgcaaggagttcaagaaggcgaagccg
acgttcgagccggagatctcctgccaccacaactacgtggcggaggagcggtacgggggc
atggacctgcttgtgacccggaagggtgcgatccgtgccggcgacggcgagtacgggatc
attccaggctcgatgggtacggggtcgtacatcgtgaagggtctcggcaacgagcagtcc
ttcaactcggcgtcgcacggcgccggtcggcgcatgagccgcaatgcggcgaagcgccgc
ttcacgaccaaggacctggaggaccagacgcggggcgtcgagtgccgcaaggactccggc
gtcgtggacgagatcccgggcgcgtacaagccgatcgagaaggtcatcgagcagcagacc
gacctggtccaggtcgtggccaagctgaagcaggtcgtctgcgtgaagggttga
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