Streptomyces cynarae: N8I84_36670
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Entry
N8I84_36670 CDS
T09435
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
scyn
Streptomyces cynarae
Pathway
scyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N8I84_36670 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyn03021
]
N8I84_36670 (rho)
03019 Messenger RNA biogenesis [BR:
scyn03019
]
N8I84_36670 (rho)
Transcription machinery [BR:
scyn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
N8I84_36670 (rho)
Messenger RNA biogenesis [BR:
scyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N8I84_36670 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
Spore_III_AA
NACHT
AAA_22
AAA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
UXY23613
UniProt:
A0ABY6EB36
LinkDB
All DBs
Position
unmamed1:complement(8122643..8123779)
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AA seq
378 aa
AA seq
DB search
MTTTLEHPPIQQERTPQTVTGVLDIDAGGKGHLRAEGCLASPADLPVLPALIRRHGLRKG
DSLAGTRTGRSLTEVELVDGRPPEELRGRPHFRDLTPLHPRERLRLEHPASGLGGRVMDL
LSPVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPECRLMVVLLDERPEEVTDMRRSVR
GEVYASTFDRTPKQHIALAEMVVERAKRLVEQGQDVVVLLDSLTRLCRAHNNAASSGGRT
LSGGVDASALHGPKRFFGAARLAEEGGSLTILATALVETGSRADEFFFEELKSTGNMELR
LDRTLAARRIHPAVDVAASGTRREELLLGPGELATVRGLRRALQSQGQPAVETLLARLRA
TPDNAAFLRQVQPTLPAG
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacaccccccgatccagcaggagcgaacgcctcagaccgtcacc
ggagtcctcgacatcgacgccggcgggaaggggcatctgcgtgccgaaggctgcctcgcc
tcacccgccgacctccccgtactgcccgcactgatccgccgtcacgggctgcgcaagggc
gacagcctcgccggcacccgtaccggacgctccctcaccgaggtcgagctggtcgacggc
cggcccccggaggaactacgcggccgtccgcacttccgcgacctcaccccgctgcacccg
cgcgagcggctgcggctcgagcacccggcgtcgggcctgggcggacgcgtgatggacctt
ctctcacccgtcggcaagggccagcgcgggctgatcgtcgccccgcccaagaccggcaag
accgtcctgctccagcagatcgccgcggccgtcgccggcaaccaccccgagtgccgtctg
atggtggtgctgctcgacgagcggcccgaggaggtcaccgacatgcggcgctcggtgcgg
ggtgaggtgtacgcctccacgttcgaccgcacaccgaagcagcacatcgcgctcgcggaa
atggtcgtcgagcgcgccaagcgactggtcgagcagggtcaggacgtcgtcgtcctgctg
gactcgctgacccggctgtgccgggcccacaacaacgcggcctcctccggtggccgcact
ctcagcggcggcgtcgacgcgtccgctctgcacggcccgaagcgcttcttcggcgccgcc
cgtctggccgaggagggcggctcactcaccatcctggccaccgccctggtcgagaccggc
tcccgggccgacgagttcttcttcgaggagctgaagagcaccggcaacatggagctgcgc
ctggaccgcaccctggccgcccgccgcatccacccggccgtcgacgtcgccgcgtccggc
acccggcgtgaggaactcctgctcggcccgggcgagttggcgaccgtgcgaggactgcgg
cgcgctctgcagtcacaggggcagcccgccgtggagaccctgctggcgcggttgcgggcg
acgcccgacaacgcggcgttcctgcgccaggtccagcccacactgccggccggctga
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