KEGG   Shewanella cyperi: JYB88_00475
Entry
JYB88_00475       CDS       T07829                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
scyp  Shewanella cyperi
Pathway
scyp03030  DNA replication
scyp03410  Base excision repair
scyp03420  Nucleotide excision repair
scyp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:scyp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JYB88_00475 (polA)
   03410 Base excision repair
    JYB88_00475 (polA)
   03420 Nucleotide excision repair
    JYB88_00475 (polA)
   03440 Homologous recombination
    JYB88_00475 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scyp03032]
    JYB88_00475 (polA)
   03400 DNA repair and recombination proteins [BR:scyp03400]
    JYB88_00475 (polA)
Enzymes [BR:scyp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     JYB88_00475 (polA)
DNA replication proteins [BR:scyp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JYB88_00475 (polA)
DNA repair and recombination proteins [BR:scyp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     JYB88_00475 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JYB88_00475 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: QSX30191
UniProt: A0A974XN91
LinkDB
Position
complement(113145..115922)
AA seq 925 aa
MPEIAHDPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSQMAV
VFDAKGPTFRNEMYTEYKAHRPPMPDDLRSQIAPLHRIIKALGLPLLCIPGVEADDVIGT
IAVQAAAEGRSVLISTGDKDMAQLVDPHITLINTMTDTIMGPEEVTTKFGVGPELIIDLL
ALMGDKADNIPGLPGVGEKTALAMLTGAGGVGKLLAEPDSVTELAFRGAKTMAAKIRDNT
EMLELSYRLATIKTDVTLEQDWHSLSLTEPDRDELIACYGEMEFKRWLAEVLDNKSPRGN
AKNGAQTQDAQAPQDSAPAPVIDTQYDTILSEAQLDSWLERLRQAELFAVDTETTSLDYM
QAELVGLSFALEAGKAAYLPIGHDYPGAPEQLPRQLVLDKLKPLLEDPAVHKVGQNIKYD
MSVLANAGIKLKGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQL
TFNQIALEQAAPYAAEDADITLRLHQHLWPRLEREQGLASVFKELELPLIDVLSDIERRG
VLIDAMLLSQQSDELARKIDQLEQQAHEIAGGPFNLSSTKQLQELFFDKLGYPVLKKTPK
GAPSTAEEVLVELALDYPLPKIILEHRSLTKLKSTYTDKLPLMINGKTGRVHTSYHQANA
ATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPEGKLILAADYSQIELRIMAHLSQDPGLL
KAFAEGKDIHRATAAEVFDVAFETVTPEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEA
QSYIDTYFARYPGVLKYMEETRAAAAEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAI
NAPMQGTAADIIKKAMIAIQHWIATETQGEISMIMQVHDELVFEVDADKAEALKSKICSL
MAAAANLDVPLLAEAGLGDNWDQAH
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgccagaaatagcccacgacccactcatcctggtggatggttcttcctacctgtatcgc
gcctattatgccccgccacacctgaccaactccaagggtgaagccacgggtgccgtttac
ggtgtggttaatatgctgcgcagtttgctgtcccgctaccagcccagccagatggcggtg
gtcttcgatgccaagggacctaccttccgcaacgagatgtacaccgaatacaaggcccac
agaccgccgatgccggatgatctgcgcagccagattgcgcctttacatcgcattatcaaa
gcattggggctaccgctgctgtgtattcccggcgtcgaggccgacgacgtgataggcact
atagcagtgcaggcggccgccgaaggtcgcagcgtgctgatcagcacaggtgataaggac
atggcccagctggtcgatccccatatcacgctgatcaacaccatgaccgacaccataatg
gggccggaagaggtgaccaccaagtttggtgtcggacccgaactgattatcgacctgctg
gcactgatgggcgacaaggccgataacatccctggcctgcccggtgtgggtgagaagacc
gcactggccatgctcacaggcgccggtggtgtcggcaaactgctggccgagcccgacagt
gttaccgaactggcgttccgcggtgccaagaccatggcggccaagatccgtgacaatacc
gagatgctggagctgtcctaccgcctggccaccattaagacagacgtcaccctggaacag
gactggcacagcctgtctttgaccgagcccgaccgagacgagctgattgcctgctacggc
gaaatggaattcaagcgttggctggcagaagttctggacaacaagagtcccagaggaaac
gccaaaaatggcgcgcaaactcaagatgctcaagcgccacaggatagcgccccggcccct
gtcattgacactcagtacgataccatcttgtccgaagcgcaactggacagctggctggag
cgcctgcgccaggcggaactctttgcggtcgataccgaaaccaccagtctcgactacatg
caggccgaactcgttggcctgtccttcgccctcgaagccggcaaggccgcctacctgcca
attggccacgactatccaggcgcgccggagcagttgccacgccagctggtgctcgacaaa
ctcaagccattgctcgaagacccggccgttcataaggtgggtcagaacatcaagtacgat
atgagtgtgctcgccaacgccggcatcaaactcaagggtgtggtctttgataccatgctc
gagtcctatgtgttcaactctgtggcctcccgccacgacatggatggcttggcactcaaa
tacctgggccacaagaatattgccttcgaagacatagccggcaagggcgccaagcagctg
accttcaaccagatagctctggaacaggccgcgccgtacgccgccgaagacgcggatatt
accctgcgcctgcaccaacatttgtggccaagactggaacgtgaacaaggattggcaagc
gtgttcaaggagttggaactgccactgatagatgtgctgtcagacattgagcgccggggt
gtattgatcgatgccatgttgctgtcacagcaaagcgatgaactggcacgcaagatagat
cagcttgaacagcaggcccacgagatcgccggcgggcccttcaacctgtcgtccactaag
caattgcaggaactgttctttgacaagctgggttacccagtgttgaagaagacccccaag
ggtgcgccatccaccgccgaggaagtcttggtggagctggcactggattatcctctgccg
aaaatcatccttgaacaccgcagcctgaccaagctcaagagtacctatacggacaagctg
ccgctgatgatcaatggcaaaacgggtcgggtacacaccagctatcaccaggccaacgcc
gccaccggccgcctctcgtccagcgatcccaacctgcagaacattcccattcgcaccgaa
gaaggtcgccgtattcgccaggcctttatcgcccccgaaggcaaactgatcctggcggcc
gactattcccagattgaattgcggatcatggcgcatctgtcccaggatcccggcctgctg
aaggcctttgccgagggcaaagacattcacagggccaccgccgccgaggtctttgatgta
gcctttgaaaccgtgaccccggagcaacgccgccgcgccaaagcggtcaacttcggtctg
atttacggcatgtcagccttcggcctcgcccgtcagctcgacatcccccgcaacgaggcc
caaagctatatagatacttactttgcccgctatccaggggtgctcaagtatatggaagaa
acccgggccgccgccgcagaacagggctatgtcagcaccctgtttggtcgccggttgtat
ttgccggaaatccgcgatcgcaacgccatgcgccgccaggccgccgagcgcgctgcgatc
aacgccccaatgcagggcacggccgccgacattatcaagaaggccatgattgccattcag
cactggatagctaccgagacccagggtgaaatcagcatgataatgcaggtacacgatgaa
ctggtgtttgaggtggatgcggacaaggccgaagcattgaagagcaagatctgcagcctg
atggcggcagcagccaacctggatgttccgctattggcggaagccggtctcggcgacaac
tgggatcaagcccactaa

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