Shewanella cyperi: JYB88_00980
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Entry
JYB88_00980 CDS
T07829
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYB88_00980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyp03021
]
JYB88_00980 (rpoC)
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_00980 (rpoC)
Enzymes [BR:
scyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYB88_00980 (rpoC)
Transcription machinery [BR:
scyp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYB88_00980 (rpoC)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYB88_00980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QSX30272
UniProt:
A0A975ALC7
LinkDB
All DBs
Position
223290..227504
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYTSRERVNGRGEGMAFESVAEAEKAYRTG
AAELHARVKVRITETQIGDNGERTQVRRIVDTTVGRALLSQILPAGLSFDLVNQDMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFHFATISGASVGINDMVIPDEKYTLVAEAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRQGEEEKQKSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEEDCGTFEGLTMKPLIEGGDVVEPLRERVL
GRVVAEDVFFPGTEDVLAPRNTLLDEAWCDKLEQHSVDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNAGTLKL
HNAKHVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLDKLEESAVEAGETIANW
DPHTHPIITEVAGNIKFVDMIDGVTMTRQTDELTGLSSIVVLDVGQRTSAGKELRPMIRL
VDDNGNDLMIPGTDVPAQYFLPGNAIVNLDDNAKISVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPNDGGDAYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHSVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCIITEAGDSEFLEGEQLEVSRVKIVNRELEAQGKRPAKFERDLLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKNRNQARAKGEVVE
AQTVSASEAEQNLADLLNLAGSQE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aagattggtctggcctcgcccgacctgatccgttcttggtcattcggcgaagtaaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgcgaaggtctgttctgcgcccgt
atctttggccccgtcaaggattacgagtgtttgtgcggtaagtacaagcgtctcaagcac
cgcggtgtgatctgtgagaagtgtggtgttgaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgaactggccagcccagttgcccacatctggttcttgaaatcactg
ccgtcccgtatcggtctgatgctggatatgaccctgcgtgatatcgagcgcgtgctgtat
ttcgaatctttcgtggtaatcgagcctggcatgaccagcctcgagcgcggtcagatgctg
accgaagaaacctacctcgacgccctcgaagagtacggcgatgagttcgaagccaaaatg
ggtgccgaagcggttctggaactgctgcgtgccatcgatctggccaaagaaatcgagcag
atgcgcgaagagctgccatctatcaattcagagacccgtcgcaagaaagtgaccaagcgt
ctgaagctgatggaagccttctacacctccggcaacaagcctgagtggatgatcctgaaa
gtgctgcctgtgctgccaccggacctgcgtcctctggtaccgctggacggtggccgcttc
gcgacttcagatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaagcgtatgctgcag
gaatctgtggatgcgctgctggataacggtcgtcgcggccgtgccattaccggttccaac
aagcgtcctctgaagtccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactcaggccgttcggtaattaccgtaggtcctacc
ctgcgtctgcatcagtgcggtctgccaaagaaaatggcactggaactgttcaaacccttc
atctacggcaagctggaaggtcgtggcctggccaccaccatcaaagccgccaagaagatg
gtagagcgcgaagttgccgaggtttgggacgtactggatgaagtgatccgcgaacatccc
gtgatgctcaaccgtgcaccaacactgcaccgtttgggtattcaggcgttcgaacccgta
ctgatcgaaggtaaggcaatccaactgcacccactggtgtgtgcggcatacaacgccgac
ttcgacggtgaccagatggcggtgcacgtacccctgaccctggaagcccagttggaagcc
cgtgcgctgatgatgtctaccaacaacatcctgtcgcccgccaacggtgagccaatcatc
gttccttctcaggacgtggtattgggcctgtactacaccagccgtgagcgtgtaaacggt
cgcggtgaaggcatggccttcgaatctgttgccgaagccgagaaagcttaccgcactggc
gctgccgaactgcatgcccgtgtgaaagtgcgtatcactgaaacccaaatcggtgacaac
ggcgagcgtacccaggtgcgtcgtatcgtcgacaccacagtgggccgcgcgctgctgtca
caaatcctgcctgccggtctgtcattcgacctggtgaaccaggatatgggcaagaagcag
atctccaagctgctgaacacctgttaccgtcagctgggtctgaaagataccgttatcttc
gccgaccaactgatgtacaccggtttccatttcgccaccatctccggtgcctctgtgggt
atcaacgacatggtgatcccggatgagaagtacaccctggtggccgaggccgaagccgaa
gtactggaaatccaggaacagttccagtctggtctggtaactgccggtgagcgctacaac
aaggtgatcgacatctgggcaagcgccaacgaaaaagtgtccaaggcgatgatggaaaac
ctgtctaccgagacagtcatcaaccgtcagggtgaagaagagaagcagaagtcgttcaac
agcatctatatgatggccgactcaggcgctcgtggtagtgccgcccagatccgtcagctg
gcgggtatgcgtggtctgatggccaagccagacggctccatcatcgaaacgccgatcgtg
gcgaacttccgcgaaggtctgaacgtactgcagtactttatttctacccacggtgcccgt
aagggtctggcggatacggcactgaagacagcgaactcaggttacctgactcgtcgtctg
gtggacgtggcccaggatctggtggttattgaggaagactgtggcaccttcgaaggtttg
accatgaagccgctgatcgaaggtggtgatgtggttgagccgctgcgtgagcgcgtgctc
ggccgtgtggttgccgaagacgtgttcttccctggcaccgaagacgtgctggcacctcgt
aacaccctgctggacgaagcctggtgtgacaagcttgagcagcacagtgttgacgaagta
atagtgcgctccgtaatcacctgtgacaccgatttcggtgtgtgtgcagcctgttacggc
cgtgacctggcccgtggtcacctgattaaccacggtgaggccattggtgtggtcgctgcc
cagtcaatcggtgaacccggtacacagctgacgatgcgtaccttccacatcggtggtgcg
gcatccagggcttctgcagaaaacagcgtacaggtgaagaacgccggtaccctgaagctg
cacaacgccaagcatgttaccaacagcgacggcaagctggtgatcgtgtcccgttcttcc
gaactggcaatcatcgatgagctgggtcgtgagaaagagcgttacaaggtaccttacggt
accgtgttggataagctggaagagtctgctgttgaagcaggcgaaaccatcgccaactgg
gatccgcacactcacccaatcatcaccgaagtggccggtaacattaagttcgtcgacatg
atcgatggcgtgaccatgacccgtcaaaccgacgagctcaccggtctgtcttccatcgtg
gtactggacgtgggtcaacgtacctccgccggtaaagaactgcgtccgatgatccgtctg
gtggacgacaacggcaatgacctgatgatcccaggcacagacgttccggcgcagtacttc
ctgcccggcaacgcgattgtgaacctggacgacaacgccaagatcagcgtgggtgacgct
ctggcccgtattccacaggaatcgtccaagacccgcgacatcaccggtggtctgccacgg
gttgctgacctctttgaagcgcgtaagccgaaagagcctgcaatcctggccgaaatcagc
ggtaccatctccttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtggtgatgcctacgaggaaatgattccaaagtggcgtaacctgaacgtgttcgaa
ggtgaaaaggttgagcgtggtgaagtgattgccgacggtccggaagcggcccatgacatt
ctgcgtctgcgtggtatccacagtgtggccaactacatagtcaacgaagttcaggacgtt
taccgtctgcagggtgtgaagatcaacgataagcatatcgaagtgatcatccgccagatg
ctgcgtaagtgcatcatcactgaagccggtgattccgagttcctcgaaggtgagcagctg
gaagtgtcccgcgtcaagatcgttaaccgcgaactggaagctcagggcaagcgtccggcc
aagttcgagcgcgatctgctgggtatcaccaaggcgtctctggcgaccgagtccttcatc
tctgcggcctcgttccaggagaccactcgcgttctgaccgaagcagcagttggcggcaag
tccgacaacctgcgtggtctgaaagaaaacgtgatcgtgggtcgcctgatcccggccggt
accggttatgcctaccacaagaaccgcaatcaggcacgtgccaagggcgaggtggttgag
gcgcaaaccgtgagtgccagcgaagccgagcaaaacctggctgatctgctgaatctggca
ggcagccaagagtaa
DBGET
integrated database retrieval system
