Shewanella cyperi: JYB88_02825
Help
Entry
JYB88_02825 CDS
T07829
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB88_02825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyp03019
]
JYB88_02825
03009 Ribosome biogenesis [BR:
scyp03009
]
JYB88_02825
Enzymes [BR:
scyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYB88_02825
Messenger RNA biogenesis [BR:
scyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYB88_02825
Ribosome biogenesis [BR:
scyp03009
]
Prokaryotic type
rRNA helicases
JYB88_02825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
DUF7464
Motif
Other DBs
NCBI-ProteinID:
QSX30614
UniProt:
A0A974XLP8
LinkDB
All DBs
Position
complement(674210..676123)
Genome browser
AA seq
637 aa
AA seq
DB search
MSFSEKTFRELGLSEALLRALDELGYENPTPIQAASITPLMAGQDILGQAQTGTGKTGAF
ALPLLSNIDAGLNAPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLQ
ALRRGPQVIVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPES
RQLALFSATMPEQIKRVANKHLQNPVNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKSGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMKIPSPETVAERRLSRLGEQVGEVIANEHLDFMKGAVAQLCQQLEVDTDV
LAAALLQLVQQERPLQLPAIQERQRDSHDERSGRGDRAERGERGERFERGERNERRRDSR
PLPANLGSAEALKDNPDIKMNRYVIDVGREHGVGVGNIVGAIANEANIDSRYIGQIQLYD
QQTTVDLPDGMPKDILVHLKKVRVCGKPLNIREVGAEGGEDFSRGGPVPKRPRKPQGERF
AERGERSDRGERPDRGERKFSDRKAPSDRKPRRSKEG
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcagtgaaaaaaccttccgtgaactcggcctttccgaggcgcttttgcgcgcc
ctcgacgaactcggctacgagaaccctacccccattcaggccgcgagtatcacgcccctg
atggccggtcaggacatactcggccaggcccagacaggtaccggcaagaccggcgccttc
gccctgccgctgctgtccaacatagatgccggcctcaacgcgccgcaaatcctggtgctg
gcaccgacccgcgaactggcggtacaggtggccgaagctttctccagctacgccaagttc
atgaagggcttccacgtgctgcccatctacggcggccagagcatgcaccaacagctgcag
gccctgcgccgcggtccccaggtgatagtcggtactccgggccgtgttatggaccatatg
cgtcgtggcacactcaagctcgataccctgaaggccttggtgctggacgaagccgatgaa
atgctgaaaatgggcttcatcgacgatatcgaatggatcctggaacacactccggaaagc
cgtcagctggcgctgttctctgccaccatgcctgagcaaatcaagcgcgtggccaacaag
cacctgcaaaacccggtcaacatcagcatcgccgccagccacaccacagtggactccatt
gagcagcgttttgtgcaggtatcccagcacaacaaactggaagccctggtgcgggtgctg
gaagtggaaaacaccgaaggtatcatcatcttcgttcgtacccgtaattcctgcgttgaa
ctggccgagaagctggaagcccgtggttatgcctcctcgcccctgcacggtgatatgaac
cagcaggcccgtgagcgcgccgtggatcagctcaagtccggcaagctggacatcattatc
gccaccgacgtggccgcccgtggtctggacgttgagcgtatcggtcacgtggttaactac
gatattccttacgataccgaagcctacgtgcatcgtatcggtcgtaccggccgcgcaggt
cgtaccggtatggcaattctgttcgtgacccatcgtgaaatgcgcatgctgcgcaccatt
gagcgcgccaccaacagccgtatttcgccaatgaagatcccaagccccgagacagtggcc
gagcgccgcctgtcccgtctgggtgagcaagtgggtgaagtcatcgccaacgaacacctg
gactttatgaagggtgccgtggctcagctgtgccaacagctggaagtggacacagacgta
ctggccgccgccctgctgcagctggtgcaacaggagcgtccgctgcaactgcccgccatc
caggagcgtcagcgtgacagccatgatgagcgcagcggtcgcggtgatcgcgctgaacga
ggtgagcgtggtgagcgcttcgagcgtggcgaacgcaatgagcgtcgtcgagactcacgt
cccctgcccgccaacctgggcagcgccgaggcactgaaggacaatcccgacatcaagatg
aaccgctacgtcatcgacgtgggtcgtgagcacggtgtgggtgtgggcaatatcgtcggc
gccatcgccaacgaagccaacatcgacagccgctacattggccagatccaactgtacgat
cagcaaaccacggtcgacctgcccgacggcatgcccaaggacatactggttcacctgaag
aaggtgcgcgtctgtggtaagccgctgaacatccgcgaagtgggcgccgaaggcggcgaa
gacttcagccgcggcggcccggtgcccaagcgtccgcgcaagccccagggcgagcgtttt
gctgagcgcggtgagcgttctgaccgcggcgaacgcccggatcgtggtgaaagaaagttc
agcgaccgcaaggcgccatccgatcgcaaaccacgccgttcgaaagaaggctga
DBGET
integrated database retrieval system
