Shewanella cyperi: JYB88_03290
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Entry
JYB88_03290 CDS
T07829
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
scyp
Shewanella cyperi
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scyp03009
]
JYB88_03290 (dbpA)
Enzymes [BR:
scyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JYB88_03290 (dbpA)
Ribosome biogenesis [BR:
scyp03009
]
Prokaryotic type
rRNA helicases
JYB88_03290 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
DIP2311-like_C
Helicase_C_2
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QSX30700
UniProt:
A0A974XLP9
LinkDB
All DBs
Position
794661..796073
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AA seq
470 aa
AA seq
DB search
MKDIPLSQQQSQAFSTLALKPALLENLGTLGFQAMTEIQAQSLPAILAGTDVIGQAKTGS
GKTAAFGLGLLHHLEVKRFRIQSLVLCPTRELAEQVAQDIRLLARGIHNIKVLTLCGGVP
MGPQVGSLEHGAHIIVGTPGRVLDHLERGRLDLSHLNMLVLDEADRMLEMGFADALDNII
AHTPADRQTLLFSATFPEQIQAIAARIMRSPLMVKVNATHDSVSISQHFFELDKHGSRMQ
ALKLLLLEHQPGSAVVFCNTKRETQMVADELADNGFSVLALHGDMEQKDREQTLLRFANG
SACVLVATDVAARGLDIEALDAVFNFHLAHDTEVHIHRIGRTGRAGSQGAAYSFYSHQDG
MKLALLEDYLGHAIVAESLPSLAALDKQPRQAAMVTLQIDGGKKQKLRPGDILGALTAGD
DGLAGTEVGKIQMGDIRAFVAVSRGAANRALKQLQKGKIKGRSYRAWLLK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggatatccccttgagccaacaacagtcacaggccttttccaccttggcccttaaa
cctgccctgcttgaaaacctcggcacccttgggttccaggccatgaccgagatccaggcc
cagagtctgccggccatcctggccggaacagatgtgataggccaggccaagacgggctcg
ggcaagaccgcggcctttggtctgggattgctgcatcaccttgaggtgaaacgcttccgc
attcagagcctggtgctgtgtccaacccgggagctggcagagcaggtggcccaggacata
cggctgttggcccgcggcatccacaatatcaaggtgttgaccctgtgtggtggtgttccc
atgggcccccaggtgggatccctggagcacggcgcccatatcatagtcggcactccgggc
cgggtactcgatcacctggagcgaggtcgcctggatttgagccatctcaatatgctggtg
cttgatgaggccgatcgcatgctggaaatgggctttgccgatgcgctcgacaatatcatc
gcccacaccccggccgatcggcagaccctgttgttcagcgccacctttccggagcagatc
caggccattgccgcccgtatcatgcgctcgccgctgatggtcaaggttaacgctacccat
gacagcgtcagcatcagccagcacttctttgagctggataagcacggcagccggatgcag
gccctgaaactcctgctgctggaacaccaacccggcagtgccgtggtgttttgtaacacc
aagcgtgaaacccagatggtggccgatgagctggccgacaatggcttcagcgtgctggca
ctgcatggcgatatggaacagaaagacagggaacagacgctgctgcgctttgccaacggc
agcgcctgtgtgctggtggccacagatgtggcggcccggggcctggatatcgaggctctg
gatgctgtatttaacttccatctggcccatgacaccgaggtgcacattcaccgcatcggt
cgtaccggccgggccggcagtcagggggcggcctacagtttttacagtcatcaggacggc
atgaaactggccttgctggaagactacctgggtcatgccatagtggccgaaagcctgcca
tcactggcggcgctggacaagcaaccgcgccaggcggccatggtgaccttgcagattgac
ggcggcaagaaacagaagctgcgtcccggtgacatactgggcgccctgaccgccggcgat
gatggccttgccggcaccgaggtgggcaaaattcagatgggtgacatccgcgcctttgtg
gctgtgagccgcggcgccgccaaccgggcccttaagcagctgcaaaagggcaagatcaag
ggccgcagctatcgcgcctggttgctgaagtaa
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