Shewanella cyperi: JYB88_03720
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Entry
JYB88_03720 CDS
T07829
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
scyp
Shewanella cyperi
Pathway
scyp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JYB88_03720 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyp03021
]
JYB88_03720 (rpoD)
Transcription machinery [BR:
scyp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JYB88_03720 (rpoD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
QSX30778
UniProt:
A0A974XP05
LinkDB
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Position
complement(889298..891148)
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AA seq
616 aa
AA seq
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MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEEAP
DADEMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQSSVAEYPQAIAMILEQFDQYEADGLRLSDIISGFVNPDEDDVAPTATHI
GSDLSEDELEDEDDVDDEDEDEEGGDSDDDGAKGPDPEEARERFSALRTAYETALKVIDA
KGREHPEATKALFELGEIFKEFRLVPKQFDRLVKSMREMMDRVRVQERLIMKLCVEQAKM
PKKNFVKLFTGNETDLTWFNKEIAASRAYSGDLKMVEDDVLRCRSKLESIEGETGLSIAA
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATS
ESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEILKSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaactcaaattgttgctcgccaaaggtaaagagcaaggt
tatttaacctatgcagaagtgaatgaccacttgcctgcagatatggtcgactccgaccag
atcgaagatattatccagatgatcaatgacatgggtatccgcgtatacgaagaagcgccg
gatgccgatgaaatgatgatgtcggaagacaacaccgacgaagatgcagccgaagaagcg
gccgcagccctggcgacggttgaaagcgagcttggtcgcaccacggatcccgtgcgcatg
tacatgcgtgaaatgggcacggtagaactgctgacccgcgaaggcgaaattgtgatcgcc
aagcgcatcgaggaaggtatcaacacggtacaaagctcggtggccgaatatccccaggcc
atcgccatgatcctggaacaattcgaccagtacgaggccgatggcctgcgtctgtcagac
atcatctccggctttgtgaatccggatgaagacgatgttgcccccaccgccacccacata
ggttcagatctgtccgaagatgaactggaagatgaagacgatgtggatgatgaagatgag
gatgaagaaggcggcgacagcgacgacgatggcgccaagggaccggatcccgaggaagcc
cgcgagcgtttcagcgccctgcgtaccgcctacgaaactgctctcaaggtcatagacgcc
aagggtcgtgaacatcctgaagccaccaaggcgctgtttgagctgggtgaaatcttcaag
gaattccgcctggtacccaaacagttcgaccgtctggtcaagagcatgcgcgaaatgatg
gaccgcgtccgcgttcaggaacgtctgatcatgaagctgtgtgtcgaacaggccaagatg
ccgaagaagaacttcgtcaagctgttcaccggcaatgaaaccgacctgacctggttcaac
aaggaaatcgccgccagccgcgcttactcaggcgatctgaagatggtggaagacgacgta
ctgcgctgccgcagcaagctggagtccattgagggcgaaaccggcttgtccattgccgcc
atcaaggacatcaaccgtcgcatgagcataggtgaggccaaggcccgccgtgccaagaag
gaaatggtggaagccaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgc
ggcttgcaattccttgacctgatccaggaaggcaacatcggcctgatgaaggccgtggac
aagttcgaataccgtcgtggttacaagttctccacctatgcgacctggtggatccgtcag
gccatcacccgctccattgcggatcaggcccgcaccattcgtattccggtgcacatgatt
gagaccatcaacaagctcaatcgcatcagccgccaaatgctgcaggaaatgggccgtgag
ccgtctccggaagaactggccgagcgcatgatgatgccggaagacaagatccgcaaggtg
ctgaagatagccaaagagccaatctccatggaaaccccaatcggtgacgatgaagattcg
catctgggtgactttatcgaggacaccaccctcgaactgccactggacagcgccaccagc
gaaagcctgaagcaggccacccacgaagtgctcgccggcctgactgcccgtgaagccaag
gtgctgcgtatgcgtttcggtatcgacatgaacacagaccacacccttgaggaagtgggc
aagcagttcgacgtgacccgtgagcgtatccgtcagattgaagccaaggccctgcgcaag
ctgcgtcatccaagccgctcggaaatactcaagtccttcctggacgagtaa
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