Shewanella cyperi: JYB88_04405
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Entry
JYB88_04405 CDS
T07829
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
scyp
Shewanella cyperi
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scyp03016
]
JYB88_04405 (truB)
Enzymes [BR:
scyp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
JYB88_04405 (truB)
Transfer RNA biogenesis [BR:
scyp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JYB88_04405 (truB)
Prokaryotic type
JYB88_04405 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
FoP_duplication
Motif
Other DBs
NCBI-ProteinID:
QSX30898
UniProt:
A0A974XP80
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All DBs
Position
1034568..1035515
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AA seq
315 aa
AA seq
DB search
MARRSKGRAIDGIVLLDKPTGMSSNFALQRVKRLYNASKAGHTGALDPLATGMLPVCLGE
ATKFSSHLLDADKRYLVTAKLGERTDTSDSDGEVVSTRPVNVTREQLDAALDTFRGDNMQ
VPSMFSALKYQGQPLYKYAREGKEVPREARPITVFELNFISWEGDELTLDIHCSKGTYIR
TIVDDLGEKLGCGAHVIMLRRTQVAKYPYDRMVTLEQLEALVAGAHERGEASESVLDPLL
LPMDTAVADLPLINLPESVGVYLLNGNPVQAPGLKPDQLVRISLGDEQRFVGIGIMDNKG
LLAPKRLVVFSRDGD
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcgttccaagggccgcgccatcgacggcatagtgctgctggataagcctaca
ggcatgagttccaactttgccttgcaaagggtcaagcgcctgtacaacgcgtccaaagcc
ggtcataccggggctctggaccctctggcgaccggcatgttgcctgtgtgtcttggcgaa
gccaccaagttttcctcccatctgcttgatgccgacaagcgctatctggtgaccgccaag
ctgggtgagcgcaccgataccagcgactcggatggtgaagtggtcagtacccgacctgtc
aatgtcacccgtgagcaactggatgcggccctggataccttccgcggcgacaacatgcag
gtgccgtcgatgttctcggcgctcaaataccagggccaacccctgtacaagtatgcccgt
gaaggcaaggaagtgccccgcgaagcccggcccatcacggtatttgagctcaacttcatc
agttgggaaggtgatgagctgacgttggacattcactgctccaagggcacctatatccgt
accatagtcgatgatctgggtgagaagctcggttgtggcgcccatgtgatcatgttgcgc
cgaacccaggtggccaaatatccctacgacaggatggtcaccctggagcagctggaagcc
ctggttgccggggcgcacgagcgaggtgaggcaagcgagtccgtgctggatccgctgctg
ctgcccatggataccgcagtggcggatttaccgctgattaatctgcccgaaagcgtcggt
gtctatctgctcaatggtaatccggtgcaggcgccgggacttaagcccgaccaattggta
cgcatcagcctgggtgatgagcagcgtttcgttggcatcggcatcatggacaacaaggga
ttgctggcacccaaacgtctggtggtgttcagcagggatggggattaa
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