KEGG   Shewanella cyperi: JYB88_04635
Entry
JYB88_04635       CDS       T07829                                 
Symbol
ribD
Name
(GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
scyp  Shewanella cyperi
Pathway
scyp00740  Riboflavin metabolism
scyp01100  Metabolic pathways
scyp01110  Biosynthesis of secondary metabolites
scyp01240  Biosynthesis of cofactors
scyp02024  Quorum sensing
Module
scyp_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:scyp00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    JYB88_04635 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    JYB88_04635 (ribD)
Enzymes [BR:scyp01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     JYB88_04635 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     JYB88_04635 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD
Other DBs
NCBI-ProteinID: QSX30938
UniProt: A0A974XPC7
LinkDB
Position
1093307..1094434
AA seq 375 aa
MWSATDTQMMSRAIMLARRGSYTTRPNPNVGCVIVDSDGAIVGEGWHIRAGGPHAELHAL
RQAGDKARGATAYVTLEPCSHYGRTPPCAKALIEHGLKRVVVAMTDPNPEVAGRGIKLLQ
DAGIEVQSGLLESDARSLNPGFLSRMERKRPYVRVKLAASLDGKTALANGESKWITGPEA
RRDVQRLRAQSCALITGIGTVLSDDPSLNVRHAELGGLGNSLAEAELIQPVRVVLDSNCR
ISPKAKLFGIESPIILVSATPYEPELLKALPHFVSTLVLPAGDGCIDLAALLTHLGQSCN
LVLVEAGAKLAGSFVEQALCDELVLYQAPKILGCHGRDLLQLPDYQTMDAIPSLTLMDER
RLGQDRRFVFRLAAA
NT seq 1128 nt   +upstreamnt  +downstreamnt
atgtggtctgcaaccgatacccaaatgatgagccgcgccatcatgctggcacggcgcggc
agttacaccacccgccccaaccccaatgtgggttgcgtcatagtggatagcgatggtgcc
atagtgggcgagggctggcatatacgtgccggcggcccccacgccgagctccatgccctg
cgtcaggcgggagacaaggcccgcggcgccacagcttacgtcaccctggaaccctgcagc
cattacggccgcacgcccccctgcgccaaggcgctgattgagcacggcctcaagcgggtg
gtggtggccatgacagatcccaatccagaggtggccggtcgcggcattaagctgctgcaa
gatgccggtatcgaggtgcagtccggcctgctggaaagcgacgcccgtagcctgaacccg
ggatttttatcgcgtatggagcgcaagcgcccctatgtgcgggtcaagctggccgcaagc
cttgatggcaaaacggccctggccaacggtgagtccaaatggattaccggcccggaggct
cgccgtgatgtgcagcggctgagagcccaaagttgcgcccttatcacgggcataggcaca
gtgctctcggatgaccccagtcttaatgttcgccatgctgagctcggcggtttgggcaat
agtcttgccgaggccgagctgattcagccggtgcgggtggtgctggacagcaactgccgc
atctcgcccaaggccaaactctttggtatcgaaagcccgattatcctggtgtcggccacg
ccctatgagccggagctgctcaaggccttgccccattttgtcagcaccctggtgctgccg
gcgggcgatggctgcattgatcttgccgcgctgctgactcacttgggccagagctgcaat
ctggtgctggtggaagccggtgccaagctggccggcagttttgttgagcaggcgttgtgc
gatgaactggtgctgtatcaggcgcccaagatcctcggatgccatggtcgcgatctgctg
caattgccggactaccagaccatggatgccataccttccctgaccctgatggacgagcgc
cgcctgggccaggacagacgatttgttttcagactcgctgcggcctga

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