Shewanella cyperi: JYB88_06260
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Entry
JYB88_06260 CDS
T07829
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
scyp
Shewanella cyperi
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyp03032
]
JYB88_06260
03036 Chromosome and associated proteins [BR:
scyp03036
]
JYB88_06260
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_06260
DNA replication proteins [BR:
scyp03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
JYB88_06260
Chromosome and associated proteins [BR:
scyp03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
JYB88_06260
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
JYB88_06260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Peptidase_M35
HU-DNA_bdg
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
QSX31233
UniProt:
A0A975AMF0
LinkDB
All DBs
Position
1485578..1485850
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSELIEKIASGADISKAAAGRALDSFIDAVTESLKDGGKISLVGFGTFEVRQRAERTG
RNPQTGKEIKIAAANIPAFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatctgaactaatcgagaaaatcgcttctggtgctgacatttccaaggccgct
gccggccgtgcactggattctttcatcgacgctgtgactgaaagtctgaaagatggcggt
aaaatttctcttgttggttttggtacttttgaagtacgtcagcgcgctgagcgtaccggt
cgcaacccacaaacgggtaaagagatcaagattgctgcggccaacatcccagctttcaaa
gctggtaaagcgctgaaagacgctgtcaactga
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integrated database retrieval system
