Shewanella cyperi: JYB88_07600
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Entry
JYB88_07600 CDS
T07829
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB88_07600 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyp03019
]
JYB88_07600 (rne)
03009 Ribosome biogenesis [BR:
scyp03009
]
JYB88_07600 (rne)
Enzymes [BR:
scyp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JYB88_07600 (rne)
Messenger RNA biogenesis [BR:
scyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JYB88_07600 (rne)
Ribosome biogenesis [BR:
scyp03009
]
Prokaryotic type
rRNA processing factors
JYB88_07600 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QSX31471
UniProt:
A0A975AM47
LinkDB
All DBs
Position
complement(1771297..1774521)
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVISEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMSDLEVPAGMGLIVRTAGVGKESSEL
QWDLKVLLRHWDAIREASETHPAPMLIHQESNVIVRAIRDYLRRDVGEILIDHPRVFEEA
KQHIALVRPDFVERVKLYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHQDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHEVEVYVIPDPHMMTP
DFKVIRHRKDDEIEEASYKRTEKPETKLYEPRKLERTAAPEPVLKGFGTPVPMETQVSKP
AAVAKPAADVAAKPGFFSRLFSAIGAIFTPAEKQEEVKEKPTKTETRQGANRSRTRRRPG
EEGDKRGGRGEGNRGEGSRDGRRGGRTKQEAQSSREDKPLREREEQPKRERAPKRERVER
EKPVEQVEVAQFDDEPKQEVVRERRQRRNMRRKVRINESQELNEQVQVAAEVGQTAELGQ
TEVKVDAPQEDKPAKPRRQPRKPKSEEQMDEAAETKATAAEATEVVEAAEVLEDAVTQVA
VSNEFAAPQGDDVDTDAIDVDAEVSDEDKPKREGRDGQRRSRRSPRHLRAAGQRRRRDEQ
EANGELPESDEAVAEVAPQVEATFVEASGVEASVVEAPVAEANVTESAASAAPVVAEIAA
ETQVVATETPAAEAESAAPAAVEAPVVAAPVAETAVVTEAPVVSEAVVKQDAVQEQPAPV
AVITEKAEVAKTAADAAKATAASAPMAKPEAIKPVKAHKVPEVKAAPVSNEVKPARAVSS
RFGSMVSSDMTKPVVENREHVATPKGREYDASDAKATESMVSKANSAGSDMARP
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgtagccctggtagat
gggcaacaactttatgatctggatattgaaagtcctggtcatgagcagaaaaaagccaac
atttacaagggtaaaatcacccgcgtagaaccctctctcgaagcagccttcgtagactat
ggtgccgagcgccacggtttcctgcccctgaaagaaattgcccgtgaatactttcccaag
ggatactccttccagggtcgccccaatatcaaggaagtgatcagcgaaggtcaggaagtc
atagtccagattgacaaagaagagcgtggcaacaagggcgccgccctgaccacctttatc
agcctggccggttcttacctggtgctgatgcccaacaacccccgtgccggtggtatctcc
cgccgtatcgagggtgatgagcgcaccgaactgaaagaagccatgtcggatctggaagtg
cctgccggcatgggcctcatcgtccgtaccgcaggtgttggcaaggaatcctccgagctg
caatgggatctcaaggtgctgctgcgccactgggacgccatcagggaagcctccgagacc
catcctgcgcccatgctgatccatcaggaaagcaacgtgatagtgcgcgccatccgcgac
tatctgcgccgcgacgtgggcgaaattctcatcgaccacccaagggtattcgaagaggcc
aagcaacatattgctttggtacgtccggattttgttgagcgggttaagctgtacaaggcc
gaagtgccattgttcacccattaccagattgaatcccagattgagtcggccttccagcgc
gaggtgcgtctgccttcaggcggttcgattgtaattgaccccacagaggccctgacctct
atcgatatcaactccgcccgtgctaccaagggcggtgatatcgaagaaacggccctgaac
accaacctggaagcggctgatgaaatcgcccgtcagttgcgtctgcgcgacttgggtggt
ctggtggttatcgacttcatcgacatgaccccggttcgtcatcaacgcgaagtggaaaac
cgcctgcgtgatgcagtgcatcaggatcgcgcccgggtgcaactgggtcgtatctcccgt
tttggtctgatggaaatgtcccgtcagcgcctgcgtccgtccctggaagaatctgcagcc
catatctgcccacgctgtcatggccagggcactatccgcggcacagaatctttggccctg
tctatcctgcgtctgatggaagaagaagccatcaaggaaaacacctcgcagatcgaggcc
atagtgccagtggacgtggccgccttcctgctgaacgaaaaacgtaaggctattcgcatc
acagaacagcgccatgaagtcgaagtgtacgtgatcccggatccgcacatgatgacgcct
gacttcaaagttatccgccaccgcaaggatgacgagattgaagaagccagctacaagcgt
actgaaaagcctgaaaccaagctgtacgagccacgcaaactggagcgcactgccgcccct
gagccggttctgaaagggtttggaactcccgtacctatggaaacccaggtcagcaaacct
gctgccgttgccaagccggctgctgatgtggctgcgaagccaggattcttcagccgtctg
ttctcagccattggtgccatcttcacccctgccgaaaagcaggaagaagtgaaagagaaa
ccgaccaagaccgaaacccgccaaggcgccaaccgcagccgtactcgtcgtcgtcccggt
gaagagggtgacaagcgcggtggtcgcggcgaaggcaatcgcggggaaggcagccgtgac
ggtcgccgtggcggccgtactaagcaggaagcccaaagcagccgcgaagataaaccactg
cgtgagcgtgaagaacagccaaaacgtgagcgcgctcccaagcgtgaacgcgttgagcgt
gaaaagccggttgaacaggtagaagttgcccagtttgacgatgaacccaagcaggaagtg
gtgcgtgagcgtcgccagcgtcgcaacatgcgtcgtaaggtccgcatcaacgagtcccag
gaactgaatgaacaggtccaggtggctgccgaagtgggtcaaaccgccgaattgggtcaa
accgaagtcaaagtggatgcgccgcaggaagacaagcctgccaagccacgtcgtcagcct
cgcaagccaaagagcgaagagcagatggatgaggcagccgaaaccaaggcaactgcagca
gaagcaactgaagtggtcgaagccgctgaagttctcgaagacgcagtcacccaggtcgcg
gtatcaaacgagttcgctgcgccccaaggcgatgatgttgacaccgatgcgatcgatgtc
gatgcagaggtttccgacgaagataagccaaagcgtgaaggtcgcgatggccaacgtcgc
agccgtcgcagtccccgtcacctgcgtgctgccggtcagcgccgtcgccgtgatgagcag
gaagccaacggagaattgcctgaaagcgatgaagctgtcgctgaagtggcaccccaggtc
gaagccacttttgttgaagcatctggcgttgaagcatctgttgttgaagcgcccgtcgcc
gaagcaaacgtgactgaaagtgccgcttctgccgcgcccgttgttgcagagattgccgct
gaaactcaggttgtggcgacagaaacgccggctgccgaagctgaatccgcagcgcccgcg
gctgttgaagcgccagtagtggctgccccagtagccgaaaccgctgttgtcactgaagct
cctgttgtaagtgaagcagtggtcaagcaagacgcggttcaggaacagcctgctccggta
gccgtcatcacagagaaggctgaagtcgccaaaactgcagccgatgcagccaaggccact
gccgccagcgccccaatggccaaaccggaagcgatcaagccggtgaaagcccacaaggtg
ccagaggtcaaggcagcgccggtgagcaacgaagttaaacctgcccgcgccgtcagcagc
cgcttcggctccatggtcagttcagatatgaccaagcctgtggtggagaaccgtgagcat
gtggcgacccccaagggccgcgagtatgatgcctccgacgccaaggcgaccgaatccatg
gtgagcaaggccaacagtgccggctcggacatggctcgcccctga
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