Shewanella cyperi: JYB88_08075
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Entry
JYB88_08075 CDS
T07829
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYB88_08075 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_08075 (recB)
Enzymes [BR:
scyp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JYB88_08075 (recB)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB88_08075 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
QSX31561
UniProt:
A0A975AM78
LinkDB
All DBs
Position
complement(1868881..1872426)
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AA seq
1181 aa
AA seq
DB search
MSAASSQTLDALHLPLHGTRLIEASAGTGKTYTIANLYLRLLLGLGEQGASETPLKVDEI
LVVTFTNAATSELRDRIRRRIQQAFRAFLGLRIKDGFIEALLDGVAEQDRPMALRRLDAA
LKGLDEAAIYTIHGFCQRVLADMAFESALLFESEFTLDDSEYLQRAVRDFWRAHCYGMAP
ELAALIRAKFESPDALMSALRPLLGAQDAVPAQSPAPFEQAAQDLSQGLARMRLSWPRDR
DATLALLTKLPLNGTSYGKQADGYPKLADMFLDMDNWCRFGSGLPPAKVLSALALGNIKL
NKGGSLPSPQQAPLLAQIEALAHTAEQLLPAFLVTAREEIRQRFHALKRQQQLLSPDDLL
LTLAGALEGEDKTLASVLRRRFPIALIDEFQDTDPLQFAIFGTIYPEGRLLMIGDPKQAI
YAFRGGDIHTYLKARATTTAQYHLGTNYRSAESMVAGVNRLFQAREDAFIDAAIPFDAVD
SQARGEDKSLKVGGHTAPGLQLRLLAEDPVTGLNKTDARARLAEDAAAEICRLLTLAADG
EAQIVKESKEKPLLARDIAVLVRDRNEAAVMRDALAKRRIGAVFLSRDSVFDTLEARELA
LVLLALAKPRDEQAIRAAMATELWGGRASDIHGFNVDEDKRAALLEQFANLHLLWQRQGV
MPALMQLATETGLLERLKGHENAERRLTDIRHLSELLQQKASELDGMAALLHWYEQELCQ
VSGGEEQQLRLESEQNLVQIVTIHKSKGLEYGVCFIPFISLARDQSRKPTPLLYHSDKGL
CWDLGGSDEAFERWKQEQLAEDLRLLYVALTRPVYRCYLYIANHSRMLKAGLKSHLHQTA
IGYCLGIDNEDCDSQLLAAKAKALAGDIMALEWVAAEADNRVLPTTEHQGSELLLRKPRA
RDAVRWRVGSYSALVKDSSHGSKPGAADEHYDVLESLPSPRTTETSLDRFGFDRGANAGS
FMHLVLELFDFTRADTELQTALTKAMAQYGIADHWFDMLKDWYLSLLQAPLDGGQLTLSG
LAAADKLVEMEFYLPVMGLNPDKLSALLGRYGYGSQYSFETLCGMLKGFIDLVFCHGGRF
YVADYKSNHLGHDFSCYDRQTMASAIRDHHYDLQYLLYSLALHRFLHQRLPDYDYERDFG
GVYYLFLRGMHATEPGKGIFYDRPPKALIEELDKMFTGEPG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgcaagcagccaaaccctggacgccctccacctgccactgcacggcacccgg
cttattgaggccagcgccggcaccggcaagacctacaccatagccaacctgtacctgagg
ttgttgctgggacttggggagcaaggggccagcgaaaccccgctgaaggtggatgagatt
ttggtggtgacctttaccaatgccgccaccagtgaactcagggacaggatccgtcgccgc
attcagcaggcattccgggcgtttctgggccttcgcatcaaggatggctttattgaggcg
ctgctcgacggggttgccgagcaagacagacccatggcgctcaggcgcctcgacgcggcg
ctcaagggactcgacgaggcggccatctataccattcacggcttttgccagcgggtgctg
gcggatatggcctttgaatctgcgctgctgtttgagtccgagttcaccctggatgacagc
gaatatctgcaacgggcggtgcgcgacttctggcgtgcccattgctacggcatggcccct
gagctggcggccttaatccgcgcaaaatttgaaagcccggatgccctgatgtcggccctg
agacccttgctcggcgcccaggacgcggtcccggcgcaatcaccggccccctttgagcag
gccgcccaagatctcagccagggattggcccgtatgcgcctgtcctggccaagggacagg
gatgccaccctggcgctgttaaccaaactgccgctcaatggcaccagctatggcaaacag
gccgacggctatcccaagctggccgacatgtttttggatatggataactggtgccggttt
ggcagcggcctgcctccggcaaaggtgctttcggcgctggcccttggcaacatcaagctc
aacaagggcggcagcctgccctcgccccagcaagcaccactgctggcgcagattgaggct
ttggcacacacagcagagcaattgctgccggcctttctggtgacggcccgggaggaaatc
cgtcagcgtttccacgcccttaagcgccaacagcaactgctgagcccggacgatctgctg
ctgaccctggcaggcgccctcgaaggtgaagacaagaccctggcatccgtgctcaggcgc
cgtttccccattgcccttatcgatgaattccaggatacggatccgctgcagttcgccatt
ttcggcaccatctatcccgaaggccgtttgttgatgattggcgatcccaaacaggccatt
tacgccttccgtggcggtgatatacacacttacctcaaggcccgtgcaaccaccacggcc
caatatcatctgggcaccaactaccgctccgccgaatccatggtggctggggtcaatcga
ctgttccaggcccgggaagatgcctttatcgatgccgccattccctttgacgccgttgac
agccaggcccgcggcgaggacaaaagccttaaggttggaggccacacagcgccgggactg
cagctgcgcctgctggcagaggaccctgtcacgggtcttaacaagacagatgccagggcg
aggcttgccgaagatgccgccgccgagatctgccgcctgctgaccctggctgcagacggt
gaggcacagatagtcaaagagtccaaggaaaaaccactgttggcgcgggatatcgccgtg
ctggtcagggacaggaacgaggccgccgtgatgcgcgatgccctcgccaaaaggcgcata
ggcgccgtattcctcagccgcgacagcgtgttcgataccctggaggccagggagctggcg
ctggtgctgttggcgctggcaaagcccagggatgagcaggctatccgcgcggccatggcg
accgagctttggggcggccgcgccagcgatattcatggcttcaacgttgatgaagacaaa
cgggccgcgctgctggagcaatttgccaatctgcacctgctgtggcaacgccagggggtg
atgccggcactgatgcaactggccacggaaaccggcttgctggaacgtctcaagggccat
gaaaacgccgagcgacggctgacggatatacgccatctgtcggaattgctgcaacagaaa
gccagcgagctggacggtatggcggccctgctgcactggtacgaacaggaactgtgccag
gtcagcggcggcgaagagcagcagctgcgactggaaagcgaacaaaatctggtgcagata
gtcaccatacacaagagcaagggcctggagtacggcgtctgctttatcccctttatcagc
ctggcacgggatcaaagccgcaagcccacccccttgctgtatcactcagacaagggcctg
tgttgggatctaggcggcagcgatgaggcctttgagcgctggaagcaggaacagctggcc
gaagatctgcgcctgctgtacgtggccctgacccgtcccgtgtaccgctgttacctttac
atagccaaccacagtcgcatgttgaaggctggccttaaaagccatctgcatcaaaccgcc
atcggctattgcctcggcatagacaatgaggactgcgacagtcaactgttggcggcaaag
gccaaggcgcttgccggcgatatcatggcgctggaatgggtcgcagccgaagcagacaac
cgcgtgctgccaacgaccgagcaccagggcagcgaactgctgctgcgaaagccccgtgcc
agagacgcagtgcgctggcgcgtcggcagctactcagccctggtcaaggacagcagccat
ggcagcaagccgggggccgccgatgagcactatgatgtgctcgaatccctgccatcaccg
cggaccacagagaccagccttgaccgctttggtttcgatcgcggcgccaatgccggcagt
tttatgcacctggtattggagctgttcgacttcacccgcgccgataccgagctgcaaacc
gcgctgaccaaggccatggcccaatacggcatcgccgaccactggttcgatatgctcaaa
gactggtacctgtcactgctgcaagcaccgctcgatggcgggcaattgaccctgtcaggt
ttggccgcagccgacaaactggtggaaatggaattttacctgccggtcatggggctcaat
cccgataaactgtcggccctgcttggccgctacggctatggcagccaatacagttttgag
acattgtgcggcatgctgaaaggctttatcgatttggtgttctgccacgggggccgcttc
tatgtggccgattacaaatccaaccatcttggtcatgatttttcctgctacgacagacag
acgatggccagtgccattcgcgatcaccattacgatcttcagtacctgctgtacagcctg
gccctgcatcgcttccttcaccagcggctaccggactatgactatgagcgggatttcggc
ggtgtgtattatctgttcctgcgcggtatgcatgccaccgagcccggcaagggcatcttt
tacgacaggccacccaaggcactgatcgaggagttggataagatgttcacaggagagcca
ggatga
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