Shewanella cyperi: JYB88_08080
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Entry
JYB88_08080 CDS
T07829
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYB88_08080 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_08080 (recC)
Enzymes [BR:
scyp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JYB88_08080 (recC)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB88_08080 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QSX31562
UniProt:
A0A975AMK8
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Position
complement(1872423..1875929)
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AA seq
1168 aa
AA seq
DB search
MFRLIQSNQMEVLSSRLADLVRFPAPGSPPLGEEQILVQSPGMATWLRLELAAHNGIAAA
LAFPLPSSFIWSLCHTLLPGVPMDNAFTKEAMTWKLMQLLPGLLDGDTQGLYQPLWHYLA
AADTQDKATEQTSQPLKLYQLAGRIADIFDQYLVYRPDWILAWESGQDNPLPDGQSLPQS
ALWQPALWRQLQAFNNEHLRQSRWHRANLHQSLLEALADPNTSLAGLPKRLFVFGISSMA
PQTLEVLHALAGRIDVLMFNLSPCRQYWGDIVDPRQRARLALKYGENKLLPEHWEDSLEV
GNPLLAANGKMGRELLDLILSLPEQHLDTDEALYVEPGQDCLLHLLQQDILEMQILDDEP
LGPDLHLYQQAAKRRPLRPDDSSLCIRSCHSPLREVETLHDHLLALLAADEGLTPKDIVV
MLPDVAAYAPYIDAVFSSRRGDHAIPYAIADRGAREESPLVNSFLTALDLDNSRFGLSDI
LGMLEVPAVMARWRLDEDELARIRQWLRDAGVRWGRDGASRERLALPAFDKHSWAFGVRR
LILGYALGDDSELYLGNLPMSGIEGQQAQALGKLLDFIEMLDEFRLSMAKRARAPERLAL
LAGLLEQLYQDSDDSRDDLQLIRECLGKLSDNLSGSGFDQELPLAVMAQYFRSELGQSRV
GQRFLAGAVNFCTLMPMRSIPFQVVCLLGMNDGLYPRVQHPVGFDLMAQLGPRRGDRSRR
LDDRYLFLEALLSARRQCYISYIGHSERDNSERLPSMLVSELLDCCELSVRPAHLPLPEV
DDAQMASDFADRCSAELRRMLVWRQPLQPFDERLYRADDQSLTPSFSPQWYPQALATAKD
RLPFVDIQLTADADEWADALPLAALIRFYRDSSRFYCQRRLKLDLRLDLEQQEDEEPFAL
NALERYQLQLLLMDTALTVDEDQAPEALADLGMRLGASGQLPMAPFDGLLLTDFSRDVAP
AIERCRFLFADAEPDTLALELNLPSGQKLSGRIDRLYPKGMVNFRPGTAKAKDLLALYLR
HLCLCAAGRSAPSFLLDSGHFHSLSPLLPEMALTLLDSLVAHYRHAATVPLAFFPGCSLE
YAQAEGDHETRLAAVAPIWLDEQGGEERGEGTEPHNRRLFRFPDDFSEAGFGQLALDVYT
PLLALYHKDKLAALGDFIRVGPTTGATV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgttcagactcattcaatccaaccagatggaagtgctgtcttcgcggcttgcggatctg
gtgcgcttccctgcccccggcagcccgccccttggcgaagagcagatcctggtgcaaagc
ccgggtatggccacctggctcagattggaactggcggcccacaatggcatagcggcggcg
ctggccttccctctgccttcgagtttcatttggtcactgtgccataccctgctgcccggg
gtgcccatggacaacgccttcaccaaggaggccatgacctggaagctgatgcaattgctg
ccggggttgttggatggcgacacccagggtttataccaacctctctggcactatttggcc
gcagcggacacgcaggataaggccaccgagcagactagccagccgctcaagctgtatcaa
ctggcggggcgcatcgccgacatctttgaccaatatctggtgtaccgcccggactggatc
ctggcctgggaaagtggccaggataatccgttgcccgatggccagtccctgccgcaaagc
gccctctggcaaccggcgctgtggcgccaattacaggccttcaacaatgagcacctgcgc
caaagtcgctggcacagggccaatctgcatcagagtctgctggaggccctcgccgatccc
aatacctccctggccggactgcccaagcggctgtttgtctttggcatctcgtcaatggcg
ccccaaacgttggaggtgctgcacgcccttgccgggcgcatagatgtgctgatgtttaat
ctcagtccctgtcgccaatactggggcgatatagtggacccgcgccagcgggcccgtctg
gcgctgaagtacggtgaaaacaaactcttgcccgagcattgggaagacagtctggaggtg
ggtaacccgctgctggcggccaacggcaaaatgggccgcgagctgctcgatcttatcctc
agcttgccggagcaacacctggatacggatgaagccctttatgtggaaccgggtcaggat
tgcctgttgcacctgctgcaacaggatattctggagatgcaaattctggacgatgaaccg
ctggggccggatctgcacctgtaccagcaggccgccaaacgccggcccttgcgcccggat
gacagctccctttgcatccgcagttgccacagtcccctcagggaagtggaaaccctgcat
gatcatttgctcgcactgcttgccgccgatgaaggcttaacgcccaaggacatagtggtg
atgctgccggatgtcgccgcctacgctccctacatagatgcggtcttttcctcccgccgc
ggcgatcacgccattccctacgccattgccgacaggggcgcccgcgaagaatcccccctg
gtcaacagctttttgaccgccctggacctggataacagccgtttcggtctgtcggatatc
cttgggatgctggaagtaccggcggtgatggccaggtggcgtctggatgaggatgaactg
gcacgaattcgccaatggctgcgcgatgccggggtacgctgggggcgcgacggagccagt
cgtgagcgcctggcgctgccggcctttgacaagcattcatgggccttcggagtacgccgc
cttatcctgggctacgcgctgggcgatgacagcgagctgtatctgggcaatctgcccatg
tccggcattgaaggccagcaggcacaggcgctcggcaagcttttggactttatcgagatg
ctcgacgaatttcgcctgtccatggccaagcgagccagggcgccagagcgtcttgcgctg
ctggccggattgttggagcaactgtaccaggacagcgacgacagccgcgacgatctgcag
ctcatccgtgaatgcctgggtaagctctcggacaacctcagcggcagcggttttgaccag
gagctgccattggcggtcatggcccagtacttccgctctgagctgggtcagtctcgggtg
ggacaaagattcctcgccggcgcggtcaatttctgtaccctgatgccgatgcgctccatt
cccttccaggtggtgtgcctgctcggcatgaacgatggcctgtatcccagagtgcagcat
cccgtgggattcgatctgatggcccagcttggccccagacggggcgaccgctcccgccgt
ctggatgacagatacctgttcctcgaggcgctgttgtccgccagacgccagtgctacatc
agctatatcggtcacagcgagcgcgataacagcgaacgcctgccgtccatgctggtgtcg
gagctgctggattgctgcgaactgagcgtgcgcccggcacatctgccactgcccgaagtc
gatgacgcccaaatggccagcgattttgccgaccgctgcagtgccgaactcaggcgcatg
ctggtgtggcgtcaaccgctgcagccctttgatgagcgcctgtaccgggccgatgaccag
tcgctgacccccagcttttcgccccagtggtatccacaggccttggccacggctaaggac
aggctgccctttgtcgacatccagctcacggcggacgccgatgaatgggccgacgccctg
ccgctcgccgcgctcatacgtttctaccgtgacagcagccgtttctattgccagcggcgc
ctcaagctggatctgcgcctggatctggagcaacaggaagacgaggagccctttgccctt
aacgccctggaacgctaccagttgcagctgctgctgatggacacggcactgaccgtggat
gaagatcaggcccccgaggcgctggcagatctaggcatgcgcctcggcgcctccggtcaa
ttgccgatggcgccctttgatggtttgctgctgacggatttcagccgcgatgtggccccg
gccatcgagcgctgccgctttttgttcgccgatgccgagccggataccctggccctggag
ctcaacttgccctcgggtcaaaaactcagtggccgaatcgaccgcctctaccccaagggc
atggtcaatttccgtcccggcaccgccaaggccaaagatctgttggcgttgtatttaagg
cacctgtgtctgtgtgcagccggcagaagcgccccctccttcctgttggattccgggcat
ttccacagcctaagcccgctgctgccggaaatggcattgacgctgctggatagtctggtg
gcccattaccgccatgccgcgacagtgcctctggcctttttccccggctgctccctggaa
tacgcccaggccgagggcgatcatgagacccggctcgcggccgtggcccccatctggctc
gatgagcaagggggggaagagcgcggtgaaggtaccgagccccacaaccggcgcctgttc
cgctttcccgatgacttcagcgaagccggtttcggccaactggcgctggatgtctacacg
ccgctgctggccctgtaccacaaggacaagctggccgcgctgggcgatttcatccgcgtc
ggtcccaccacaggagccacagtatga
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